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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_011841.2 RefSeqGene
- Range
-
5002..461560
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_031935.3 → NP_114141.2 hemicentin-1 precursor
Status: REVIEWED
- Source sequence(s)
-
AL118512, AL121996, AL133515, AL133553, AL135796, AL135797, AL391824, BX928748
- Consensus CDS
-
CCDS30956.1
- UniProtKB/Swiss-Prot
- A6NGE3, Q5TYR7, Q96DN3, Q96DN8, Q96RW7, Q96SC3
- Related
- ENSP00000271588.4, ENST00000271588.9
- Conserved Domains (12) summary
-
- cd00096
Location:720 → 786
- Ig; Immunoglobulin domain
- smart00408
Location:2493 → 2557
- IGc2; Immunoglobulin C-2 Type
- smart00179
Location:5432 → 5471
- EGF_CA; Calcium-binding EGF-like domain
- smart00209
Location:4646 → 4698
- TSP1; Thrombospondin type 1 repeats
- smart00409
Location:1086 → 1167
- IG; Immunoglobulin
- smart00410
Location:2299 → 2380
- IG_like; Immunoglobulin like
- smart00682
Location:4868 → 5092
- G2F; G2 nidogen domain and fibulin
- cd00054
Location:5230 → 5263
- EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
- pfam07679
Location:1171 → 1258
- I-set; Immunoglobulin I-set domain
- pfam07645
Location:5272 → 5313
- EGF_CA; Calcium-binding EGF domain
- pfam13519
Location:42 → 212
- VWA_2; von Willebrand factor type A domain
- cl11960
Location:3244 → 3338
- Ig; Immunoglobulin domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000001.11 Reference GRCh38.p14 Primary Assembly
- Range
-
185734391..186190949
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011510038.4 → XP_011508340.1 hemicentin-1 isoform X1
- UniProtKB/Swiss-Prot
-
Q96RW7
- Conserved Domains (12) summary
-
- cd00096
Location:720 → 786
- Ig; Immunoglobulin domain
- smart00408
Location:2493 → 2557
- IGc2; Immunoglobulin C-2 Type
- smart00179
Location:5315 → 5354
- EGF_CA; Calcium-binding EGF-like domain
- smart00209
Location:4646 → 4698
- TSP1; Thrombospondin type 1 repeats
- smart00409
Location:2299 → 2380
- IG; Immunoglobulin
- smart00410
Location:1086 → 1167
- IG_like; Immunoglobulin like
- smart00682
Location:4868 → 5092
- G2F; G2 nidogen domain and fibulin
- cd00054
Location:5230 → 5263
- EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
- pfam07679
Location:1171 → 1258
- I-set; Immunoglobulin I-set domain
- pfam07645
Location:5272 → 5313
- EGF_CA; Calcium-binding EGF domain
- pfam13519
Location:42 → 212
- VWA_2; von Willebrand factor type A domain
- cl11960
Location:3244 → 3338
- Ig; Immunoglobulin domain
-
XM_024450118.2 → XP_024305886.1 hemicentin-1 isoform X4
- Conserved Domains (9) summary
-
- smart00408
Location:1843 → 1905
- IGc2; Immunoglobulin C-2 Type
- smart00409
Location:1086 → 1167
- IG; Immunoglobulin
- smart00410
Location:526 → 608
- IG_like; Immunoglobulin like
- cd00198
Location:42 → 198
- vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
- pfam07679
Location:1171 → 1258
- I-set; Immunoglobulin I-set domain
- pfam13927
Location:2383 → 2461
- Ig_3; Immunoglobulin domain
- cd00096
Location:3169 → 3235
- Ig; Immunoglobulin domain
- cl11960
Location:792 → 875
- Ig; Immunoglobulin domain
- cl28434
Location:1746 → 1822
- I-set; Immunoglobulin I-set domain
-
XM_011510041.4 → XP_011508343.1 hemicentin-1 isoform X5
- Conserved Domains (7) summary
-
- cd00096
Location:720 → 786
- Ig; Immunoglobulin domain
- smart00408
Location:2493 → 2557
- IGc2; Immunoglobulin C-2 Type
- smart00409
Location:1086 → 1167
- IG; Immunoglobulin
- smart00410
Location:799 → 884
- IG_like; Immunoglobulin like
- pfam07679
Location:1171 → 1258
- I-set; Immunoglobulin I-set domain
- pfam13519
Location:42 → 212
- VWA_2; von Willebrand factor type A domain
- cl11960
Location:792 → 884
- Ig; Immunoglobulin domain
-
XM_017002437.2 → XP_016857926.1 hemicentin-1 isoform X2
-
XM_047431608.1 → XP_047287564.1 hemicentin-1 isoform X3
Alternate T2T-CHM13v2.0
Genomic
-
NC_060925.1 Alternate T2T-CHM13v2.0
- Range
-
185089079..185545614
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054339006.1 → XP_054194981.1 hemicentin-1 isoform X1
-
XM_054339009.1 → XP_054194984.1 hemicentin-1 isoform X4
-
XM_054339010.1 → XP_054194985.1 hemicentin-1 isoform X5
-
XM_054339007.1 → XP_054194982.1 hemicentin-1 isoform X2
-
XM_054339008.1 → XP_054194983.1 hemicentin-1 isoform X3