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Tsp_01282 DNA polymerase family B, exonuclease domain protein [ Trichinella spiralis ]

Gene ID: 10911112, updated on 28-Dec-2023

Summary

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Gene symbol
Tsp_01282
Gene description
DNA polymerase family B, exonuclease domain protein
Locus tag
Tsp_01282
Gene type
protein coding
RNA name
DNA polymerase family B, exonuclease domain protein
RefSeq status
PROVISIONAL
Organism
Trichinella spiralis (strain: ISS 195)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Trichocephalida; Trichinellidae; Trichinella
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Genomic context

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Location:
chromosome: Unknown
Exon count:
22

NW_003526943.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase PTC7-like protein Neighboring gene hypothetical protein Neighboring gene DNA polymerase zeta catalytic subunit Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003526943.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The draft genome of the parasitic nematode Trichinella spiralis. Mitreva M, et al. Nat Genet, 2011 Mar. PMID 21336279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-directed DNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in error-prone translesion synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of zeta DNA polymerase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
DNA polymerase family B, exonuclease domain protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_003526943.1 Reference assembly

    Range
    5208963..5214289
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003377060.1 → XP_003377108.1  DNA polymerase family B, exonuclease domain protein [Trichinella spiralis]

    See identical proteins and their annotated locations for XP_003377108.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    E5SC16
    Conserved Domains (3) summary
    cd05778
    Location:697 → 917
    DNA_polB_zeta_exo; inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta, a family-B DNA polymerase
    smart00486
    Location:700 → 1169
    POLBc; DNA polymerase type-B family
    cl10023
    Location:944 → 1169
    POLBc; DNA polymerase type-B family catalytic domain. DNA-directed DNA polymerases elongate DNA by adding nucleotide triphosphate (dNTP) residues to the 5'-end of the growing chain of DNA. DNA-directed DNA polymerases are multifunctional with both synthetic ...
Nucleotide Protein
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