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snrpf small nuclear ribonucleoprotein polypeptide F [ Scleropages formosus (Asian bonytongue) ]

Gene ID: 108920875, updated on 14-Mar-2024

Summary

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Gene symbol
snrpf
Gene description
small nuclear ribonucleoprotein polypeptide F
See related
Ensembl:ENSSFOG00015021523
Gene type
protein coding
RefSeq status
MODEL
Organism
Scleropages formosus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Osteoglossocephala; Osteoglossomorpha; Osteoglossiformes; Osteoglossidae; Scleropages
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 21
Exon count:
4
Annotation release Status Assembly Chr Location
101 current fSclFor1.1 (GCF_900964775.1) 21 NC_041826.1 (16684543..16685922, complement)
100 previous assembly ASM162426v1 (GCF_001624265.1) Unplaced Scaffold NW_017372435.1 (955442..956823, complement)

Chromosome 21 - NC_041826.1Genomic Context describing neighboring genes Neighboring gene protein FAM180A-like Neighboring gene transfer RNA tyrosine (anticodon GUA) Neighboring gene transfer RNA tyrosine (anticodon GUA) Neighboring gene uncharacterized LOC108920914 Neighboring gene netrin 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spliceosomal snRNP assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
small nuclear ribonucleoprotein F

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Scleropages formosus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSclFor1.1 Primary Assembly

Genomic

  1. NC_041826.1 Reference fSclFor1.1 Primary Assembly

    Range
    16684543..16685922 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018729937.1 → XP_018585453.1  small nuclear ribonucleoprotein F

    UniProtKB/TrEMBL
    A0A0P7XD74
    Related
    ENSSFOP00015033721.2, ENSSFOT00015034099.2
    Conserved Domains (1) summary
    cd01722
    Location:6 → 74
    Sm_F; Sm protein F
Nucleotide Protein
Heading Accession and Version

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