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sugp1 SURP and G patch domain containing 1 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108883582, updated on 10-Apr-2024

Summary

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Gene symbol
sugp1
Gene description
SURP and G patch domain containing 1
See related
EnsemblRapid:ENSLCAG00010016250
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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See sugp1 in Genome Data Viewer
Location:
chromosome: LG4
Exon count:
14
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG4 NC_066836.1 (14815325..14822790, complement)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017363888.1 (6678923..6686379, complement)

Linkage Group LG4 - NC_066836.1Genomic Context describing neighboring genes Neighboring gene voltage-dependent calcium channel beta subunit-associated regulatory protein Neighboring gene serine/threonine kinase 11 Neighboring gene E3 ubiquitin-protein ligase RNF126 Neighboring gene potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Immune transcriptome reveals the mincle C-type lectin receptor acts as a partial replacement for TLR4 in lipopolysaccharide-mediated inflammatory response in barramundi (Lates calcarifer). Zoccola E, et al. Mol Immunol, 2017 Mar. PMID 28095348
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SURP and G-patch domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066836.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    14815325..14822790 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018676911.2 → XP_018532427.1  SURP and G-patch domain-containing protein 1

    UniProtKB/TrEMBL
    A0A4W6EBT3
    Related
    ENSLCAP00010065353.1, ENSLCAT00010083532.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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