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sp9 sp9 transcription factor [ Pygocentrus nattereri (red-bellied piranha) ]

Gene ID: 108424280, updated on 18-Jun-2024

Summary

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Gene symbol
sp9
Gene description
sp9 transcription factor
See related
Ensembl:ENSPNAG00000020827
Gene type
protein coding
RefSeq status
MODEL
Organism
Pygocentrus nattereri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Pygocentrus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 6
Exon count:
2
Annotation release Status Assembly Chr Location
101 current fPygNat1.pri (GCF_015220715.1) 6 NC_051216.1 (22228081..22230731, complement)
100 previous assembly Pygocentrus_nattereri-1.0.2 (GCF_001682695.1) Unplaced Scaffold NW_016243777.1 (3376971..3379579, complement)

Chromosome 6 - NC_051216.1Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 155a Neighboring gene secernin 3 Neighboring gene uncharacterized LOC108424281 Neighboring gene corepressor interacting with RBPJ, CIR1 Neighboring gene sp3a transcription factor Neighboring gene cell division cycle associated 7a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor Sp9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pygocentrus nattereri Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPygNat1.pri

Genomic

  1. NC_051216.1 Reference fPygNat1.pri

    Range
    22228081..22230731 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017692192.2 → XP_017547681.1  transcription factor Sp9

    UniProtKB/TrEMBL
    A0A3B4CVR5
    Related
    ENSPNAP00000014846.1, ENSPNAT00000037492.2
    Conserved Domains (4) summary
    sd00017
    Location:315 → 334
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:370 → 392
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:356 → 379
    zf-H2C2_2; Zinc-finger double domain
    cd22549
    Location:19 → 311
    SP9_N; N-terminal domain of transcription factor Specificity Protein (SP) 9 and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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