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JADE3 jade family PHD finger 3 [ Manis javanica (Malayan pangolin) ]

Gene ID: 108398836, updated on 14-Mar-2024

Summary

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Gene symbol
JADE3
Gene description
jade family PHD finger 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Manis javanica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Pholidota; Manidae; Manis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
101 current YNU_ManJav_2.0 (GCF_014570535.1) Unplaced Scaffold NW_023436173.1 (3769072..3962152, complement)
100 previous assembly ManJav1.0 (GCF_001685135.1) Unplaced Scaffold NW_016534354.1 (184805..287296, complement)

NW_023436173.1Genomic Context describing neighboring genes Neighboring gene NADH:ubiquinone oxidoreductase subunit B11 Neighboring gene regucalcin Neighboring gene U6 spliceosomal RNA Neighboring gene RP2 activator of ARL3 GTPase Neighboring gene solute carrier family 9 member A7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone acetyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein Jade-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manis javanica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference YNU_ManJav_2.0 Primary Assembly

Genomic

  1. NW_023436173.1 Reference YNU_ManJav_2.0 Primary Assembly

    Range
    3769072..3962152 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036996398.1 → XP_036852293.1  protein Jade-3

    Conserved Domains (3) summary
    COG5141
    Location:138 → 509
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    pfam10513
    Location:89 → 177
    EPL1; Enhancer of polycomb-like
    cl22851
    Location:255 → 365
    PHD_SF; PHD finger superfamily

  2. XM_036996397.1 → XP_036852292.1  protein Jade-3

    Conserved Domains (3) summary
    COG5141
    Location:138 → 509
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    pfam10513
    Location:89 → 177
    EPL1; Enhancer of polycomb-like
    cl22851
    Location:255 → 365
    PHD_SF; PHD finger superfamily
Nucleotide Protein
Heading Accession and Version

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