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HCFC2 host cell factor C2 [ Manis javanica (Malayan pangolin) ]

Gene ID: 108395213, updated on 14-Mar-2024

Summary

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Gene symbol
HCFC2
Gene description
host cell factor C2
Gene type
protein coding
RefSeq status
MODEL
Organism
Manis javanica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Pholidota; Manidae; Manis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
101 current YNU_ManJav_2.0 (GCF_014570535.1) Unplaced Scaffold NW_023435936.1 (31300433..31356680, complement)
100 previous assembly ManJav1.0 (GCF_001685135.1) Unplaced Scaffold NW_016531704.1 (543763..608189, complement)

NW_023435936.1Genomic Context describing neighboring genes Neighboring gene thioredoxin reductase 1 Neighboring gene EP300 interacting inhibitor of differentiation 3 Neighboring gene nuclear transcription factor Y subunit beta Neighboring gene glycosyltransferase 8 domain containing 2 Neighboring gene thymine DNA glycosylase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manis javanica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference YNU_ManJav_2.0 Primary Assembly

Genomic

  1. NW_023435936.1 Reference YNU_ManJav_2.0 Primary Assembly

    Range
    31300433..31356680 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037006170.1 → XP_036862065.1  host cell factor 2

    Conserved Domains (3) summary
    PLN02193
    Location:2 → 262
    PLN02193; nitrile-specifier protein
    cd00063
    Location:630 → 661
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:190 → 241
    Kelch; KELCH repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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