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ARID1B AT-rich interaction domain 1B [ Cebus imitator (Panamanian white-faced capuchin) ]

Gene ID: 108310337, updated on 14-Mar-2024

Summary

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Gene symbol
ARID1B
Gene description
AT-rich interaction domain 1B
See related
Ensembl:ENSCCAG00000027348
Gene type
protein coding
RefSeq status
MODEL
Organism
Cebus imitator
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Cebinae; Cebus
Orthologs
human mouse all
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Genomic context

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See ARID1B in Genome Data Viewer
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
101 current Cebus_imitator-1.0 (GCF_001604975.1) Unplaced Scaffold NW_016107321.1 (7606921..8048121, complement)

NW_016107321.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene transmembrane protein 242 Neighboring gene farnesyl pyrophosphate synthase-like Neighboring gene uncharacterized LOC119472673 Neighboring gene RING-box protein 2-like Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC119472676 Neighboring gene small nucleolar RNA SNORD28

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_016107321 Unplaced Scaffold Reference Cebus_imitator-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SWI/SNF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of brahma complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nBAF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AT-rich interactive domain-containing protein 1B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cebus imitator Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cebus_imitator-1.0

Genomic

  1. NW_016107321.1 Reference Cebus_imitator-1.0

    Range
    7606921..8048121 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017537335.2 → XP_017392824.2  AT-rich interactive domain-containing protein 1B isoform X2

    UniProtKB/TrEMBL
    A0A2K5QT67
    Conserved Domains (4) summary
    PHA03307
    Location:743 → 1091
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam09606
    Location:1337 → 1738
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16877
    Location:1232 → 1324
    ARID_ARID1B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1B (ARID1B) and similar proteins
    pfam12031
    Location:2105 → 2360
    BAF250_C; SWI/SNF-like complex subunit BAF250/Osa

  2. XM_017537381.2 → XP_017392870.2  AT-rich interactive domain-containing protein 1B isoform X6

    UniProtKB/TrEMBL
    A0A2K5QT67
    Conserved Domains (4) summary
    PHA03247
    Location:772 → 1126
    PHA03247; large tegument protein UL36; Provisional
    pfam09606
    Location:1291 → 1692
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16877
    Location:1186 → 1278
    ARID_ARID1B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1B (ARID1B) and similar proteins
    pfam12031
    Location:2059 → 2314
    BAF250_C; SWI/SNF-like complex subunit BAF250/Osa

  3. XM_017537389.2 → XP_017392878.2  AT-rich interactive domain-containing protein 1B isoform X7

    UniProtKB/TrEMBL
    A0A2K5QT85
    Conserved Domains (3) summary
    pfam09606
    Location:789 → 1102
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16877
    Location:1150 → 1242
    ARID_ARID1B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1B (ARID1B) and similar proteins
    pfam12031
    Location:2023 → 2278
    BAF250_C; SWI/SNF-like complex subunit BAF250/Osa

  4. XM_017537353.2 → XP_017392842.2  AT-rich interactive domain-containing protein 1B isoform X3

    UniProtKB/TrEMBL
    A0A2K5QT67
    Conserved Domains (3) summary
    pfam09606
    Location:789 → 1102
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16877
    Location:1203 → 1295
    ARID_ARID1B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1B (ARID1B) and similar proteins
    pfam12031
    Location:2076 → 2331
    BAF250_C; SWI/SNF-like complex subunit BAF250/Osa

  5. XM_017537363.2 → XP_017392852.2  AT-rich interactive domain-containing protein 1B isoform X4

    UniProtKB/TrEMBL
    A0A2K5QT85
    Conserved Domains (4) summary
    PHA03307
    Location:728 → 1105
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam09606
    Location:1298 → 1699
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16877
    Location:1193 → 1285
    ARID_ARID1B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1B (ARID1B) and similar proteins
    pfam12031
    Location:2066 → 2321
    BAF250_C; SWI/SNF-like complex subunit BAF250/Osa

  6. XM_017537318.2 → XP_017392807.2  AT-rich interactive domain-containing protein 1B isoform X1

    UniProtKB/TrEMBL
    A0A2K5QT67
    Conserved Domains (4) summary
    PHA03307
    Location:728 → 1105
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam09606
    Location:1351 → 1752
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16877
    Location:1246 → 1338
    ARID_ARID1B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1B (ARID1B) and similar proteins
    pfam12031
    Location:2119 → 2374
    BAF250_C; SWI/SNF-like complex subunit BAF250/Osa

  7. XM_017537398.2 → XP_017392887.2  AT-rich interactive domain-containing protein 1B isoform X8

    UniProtKB/TrEMBL
    A0A2K5QT85
    Related
    ENSCCAP00000019096.1, ENSCCAT00000036575.1
    Conserved Domains (3) summary
    pfam09606
    Location:775 → 1088
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16877
    Location:1136 → 1228
    ARID_ARID1B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1B (ARID1B) and similar proteins
    pfam12031
    Location:2009 → 2264
    BAF250_C; SWI/SNF-like complex subunit BAF250/Osa

  8. XM_017537372.2 → XP_017392861.2  AT-rich interactive domain-containing protein 1B isoform X5

    UniProtKB/TrEMBL
    A0A2K5QT67
    Related
    ENSCCAP00000019092.1, ENSCCAT00000036571.1
    Conserved Domains (3) summary
    pfam09606
    Location:775 → 1088
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16877
    Location:1189 → 1281
    ARID_ARID1B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1B (ARID1B) and similar proteins
    pfam12031
    Location:2062 → 2317
    BAF250_C; SWI/SNF-like complex subunit BAF250/Osa
Nucleotide Protein
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