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dus2 dihydrouridine synthase 2 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108275366, updated on 20-Aug-2024

Summary

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Gene symbol
dus2
Gene description
dihydrouridine synthase 2
See related
EnsemblRapid:ENSIPUG00020001824
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 14
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 14 NC_030429.2 (14572565..14581240)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 14 NC_030429.1 (13746971..13755670, complement)

Chromosome 14 - NC_030429.2Genomic Context describing neighboring genes Neighboring gene cAMP-dependent protein kinase type II-beta regulatory subunit Neighboring gene uncharacterized LOC124628919 Neighboring gene nuclear factor of activated T cells 3b Neighboring gene autocrine motility factor receptor a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables flavin adenine dinucleotide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA dihydrouridine synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA dihydrouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA-dihydrouridine(20) synthase [NAD(P)+]-like
Names
tRNA-dihydrouridine(20) synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030429.2 Reference Coco_2.0 Primary Assembly

    Range
    14572565..14581240
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017486145.3 → XP_017341634.1  tRNA-dihydrouridine(20) synthase [NAD(P)+]-like

    UniProtKB/TrEMBL
    W5UHU1
    Related
    ENSIPUP00020004047.1, ENSIPUT00020004238.1

  2. XM_053685975.1 → XP_053541950.1  tRNA-dihydrouridine(20) synthase [NAD(P)+]-like

    UniProtKB/TrEMBL
    W5UHU1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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