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atrnl1b attractin-like 1b [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108274052, updated on 20-Aug-2024

Summary

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Gene symbol
atrnl1b
Gene description
attractin-like 1b
See related
EnsemblRapid:ENSIPUG00020022934
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
atrnl1
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 13
Exon count:
32
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 13 NC_030428.2 (14877616..15005499, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 13 NC_030428.1 (14242659..14366481)

Chromosome 13 - NC_030428.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108273973 Neighboring gene neuregulin 3b Neighboring gene gdnf family receptor alpha 1b Neighboring gene actin binding LIM protein 1b Neighboring gene TruB pseudouridine (psi) synthase family member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
attractin-like protein 1
Names
Attractin-like protein 1
attractin like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030428.2 Reference Coco_2.0 Primary Assembly

    Range
    14877616..15005499 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047159361.2 → XP_047015317.1  attractin-like protein 1 isoform X1

    UniProtKB/TrEMBL
    W5U773

  2. XM_017483859.3 → XP_017339348.1  attractin-like protein 1 isoform X1

    UniProtKB/TrEMBL
    W5U773

  3. XM_017483860.3 → XP_017339349.1  attractin-like protein 1 isoform X1

    UniProtKB/TrEMBL
    W5U773

  4. XM_053684865.1 → XP_053540840.1  attractin-like protein 1 isoform X1

    UniProtKB/TrEMBL
    W5U773
    Related
    ENSIPUP00020044674.1, ENSIPUT00020055119.1

  5. XM_017483862.3 → XP_017339351.1  attractin-like protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A2D0SA76

  6. XM_047159362.2 → XP_047015318.1  attractin-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A979F552
Nucleotide Protein
Heading Accession and Version

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