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espl1 extra spindle pole bodies like 1, separase [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108271745, updated on 20-Aug-2024

Summary

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Gene symbol
espl1
Gene description
extra spindle pole bodies like 1, separase
See related
EnsemblRapid:ENSIPUG00020032400
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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See espl1 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
32
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 11 NC_030426.2 (27257978..27275240, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 11 NC_030426.1 (1027467..1044657)

Chromosome 11 - NC_030426.2Genomic Context describing neighboring genes Neighboring gene La ribonucleoprotein 4Ab Neighboring gene prefoldin 5 Neighboring gene zinc finger protein 850 Neighboring gene zinc finger protein 850

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article
  2. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in meiotic chromosome separation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitotic spindle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
separin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030426.2 Reference Coco_2.0 Primary Assembly

    Range
    27257978..27275240 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017479471.2 → XP_017334960.1  separin

    UniProtKB/TrEMBL
    A0A2D0RWT0

  2. XM_017479470.3 → XP_017334959.1  separin

    UniProtKB/TrEMBL
    A0A2D0RWT0
    Related
    ENSIPUP00020059166.1, ENSIPUT00020077979.1

  3. XM_053683603.1 → XP_053539578.1  separin

    UniProtKB/TrEMBL
    A0A2D0RWT0
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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