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chpf2 chondroitin polymerizing factor 2 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108268162, updated on 20-Aug-2024

Summary

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Gene symbol
chpf2
Gene description
chondroitin polymerizing factor 2
See related
EnsemblRapid:ENSIPUG00020013217
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 7
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 7 NC_030422.2 (7301448..7312118)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 7 NC_030422.1 (5658452..5665953)

Chromosome 7 - NC_030422.2Genomic Context describing neighboring genes Neighboring gene GRB2 associated, regulator of MAPK1 Neighboring gene protein kinase, DNA-activated, catalytic subunit Neighboring gene ATP-binding cassette, sub-family F (GCN20), member 2b Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3b Neighboring gene nuclear transcription factor, X-box binding 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate glucuronyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030422.2 Reference Coco_2.0 Primary Assembly

    Range
    7301448..7312118
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017472956.3 → XP_017328445.1  chondroitin sulfate glucuronyltransferase

    UniProtKB/TrEMBL
    A0A2D0RD21
    Related
    ENSIPUP00020026531.1, ENSIPUT00020030993.1

RNA

  1. XR_008396653.1 RNA Sequence

  2. XR_008396654.1 RNA Sequence

Nucleotide Protein
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