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CHPF2 chondroitin polymerizing factor 2 [ Homo sapiens (human) ]

Gene ID: 54480, updated on 23-Nov-2021

Summary

Official Symbol
CHPF2provided by HGNC
Official Full Name
chondroitin polymerizing factor 2provided by HGNC
Primary source
HGNC:HGNC:29270
See related
Ensembl:ENSG00000033100 MIM:608037
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ChSy-3; chPF-2; CSGlcAT; CSGLCA-T
Expression
Ubiquitous expression in spleen (RPKM 11.8), placenta (RPKM 11.6) and 25 other tissues See more
Orthologs
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Genomic context

See CHPF2 in Genome Data Viewer
Location:
7q36.1
Exon count:
5
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 7 NC_000007.14 (151232483..151238822)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (150929569..150935908)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene ABCF2-H2BK1 readthrough Neighboring gene H2B.K variant histone 1 Neighboring gene ATP binding cassette subfamily F member 2 Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 Neighboring gene microRNA 671 Neighboring gene negative regulator of ubiquitin like proteins 1 Neighboring gene WD repeat domain 86 Neighboring gene WDR86 antisense RNA 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

HIV-1 interactions

Protein interactions

Protein Gene Interaction Pubs
Envelope surface glycoprotein gp160, precursor env HIV-1 gp160 interacts with CHPF2; predicted interaction to be within the Golgi PubMed

Go to the HIV-1, Human Interaction Database

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • KIAA1402

General protein information

Preferred Names
chondroitin sulfate glucuronyltransferase
Names
N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase
chondroitin synthase-3
NP_001271224.1
NP_001376580.1
NP_001376581.1
NP_001376582.1
NP_061888.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001284295.2NP_001271224.1  chondroitin sulfate glucuronyltransferase isoform 2

    See identical proteins and their annotated locations for NP_001271224.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks a segment in the 5' UTR and 5' coding region which results in the use of an alternate start codon, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
    Source sequence(s)
    AC021097, AI191668, AK056331
    Consensus CDS
    CCDS64803.1
    UniProtKB/TrEMBL
    B3KPG6, G5E9W2
    Related
    ENSP00000418914.1, ENST00000495645.5
    Conserved Domains (2) summary
    pfam05679
    Location:234751
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:169261
    Galactosyl_T; Galactosyltransferase
  2. NM_001389651.1NP_001376580.1  chondroitin sulfate glucuronyltransferase isoform 3 precursor

    Status: VALIDATED

    Source sequence(s)
    AC021097
    Conserved Domains (2) summary
    pfam05679
    Location:242698
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:177269
    Galactosyl_T; Galactosyltransferase
  3. NM_001389652.1NP_001376581.1  chondroitin sulfate glucuronyltransferase isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC021097
    Conserved Domains (2) summary
    pfam05679
    Location:171688
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:106198
    Galactosyl_T; Galactosyltransferase
  4. NM_001389653.1NP_001376582.1  chondroitin sulfate glucuronyltransferase isoform 5

    Status: VALIDATED

    Source sequence(s)
    AC021097
    Conserved Domains (2) summary
    pfam05679
    Location:171627
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:106198
    Galactosyl_T; Galactosyltransferase
  5. NM_019015.3NP_061888.1  chondroitin sulfate glucuronyltransferase isoform 1 precursor

    See identical proteins and their annotated locations for NP_061888.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC021097
    Consensus CDS
    CCDS34779.1
    UniProtKB/Swiss-Prot
    Q9P2E5
    Related
    ENSP00000035307.2, ENST00000035307.6
    Conserved Domains (2) summary
    pfam05679
    Location:242759
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:177269
    Galactosyl_T; Galactosyltransferase

RNA

  1. NR_171547.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC021097
  2. NR_171548.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC021097
  3. NR_171549.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC021097

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p13 Primary Assembly

    Range
    151232483..151238822
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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