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agps alkylglycerone phosphate synthase [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108266713, updated on 20-Aug-2024

Summary

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Gene symbol
agps
Gene description
alkylglycerone phosphate synthase
See related
EnsemblRapid:ENSIPUG00020001834
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 6
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 6 NC_030421.2 (24475146..24516505)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 6 NC_030421.1 (9224784..9263281, complement)

Chromosome 6 - NC_030421.2Genomic Context describing neighboring genes Neighboring gene nfe2 like bZIP transcription factor 2a Neighboring gene uncharacterized LOC108266714 Neighboring gene uncharacterized LOC124628247 Neighboring gene phosphodiesterase 11a Neighboring gene RNA binding motif protein 45

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables FAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables alkylglycerone-phosphate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alkyldihydroxyacetonephosphate synthase, peroxisomal
Names
Alkyldihydroxyacetonephosphate synthase, peroxisomal

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030421.2 Reference Coco_2.0 Primary Assembly

    Range
    24475146..24516505
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017470378.3 → XP_017325867.1  alkyldihydroxyacetonephosphate synthase, peroxisomal

    UniProtKB/TrEMBL
    W5UG46
    Related
    ENSIPUP00020004109.1, ENSIPUT00020004300.1
Nucleotide Protein
Heading Accession and Version

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