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tnfsf11 TNF superfamily member 11 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108266635, updated on 20-Aug-2024

Summary

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Gene symbol
tnfsf11
Gene description
TNF superfamily member 11
See related
EnsemblRapid:ENSIPUG00020011960
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
Tnfsf10
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 6 NC_030421.2 (22031767..22043527)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 6 NC_030421.1 (11687515..11695585, complement)

Chromosome 6 - NC_030421.2Genomic Context describing neighboring genes Neighboring gene diacylglycerol kinase, eta Neighboring gene A kinase (PRKA) anchor protein 11 Neighboring gene epithelial stromal interaction 1 Neighboring gene DnaJ (Hsp40) homolog, subfamily C, member 15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tumor necrosis factor receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tumor necrosis factor ligand superfamily member 11
Names
Tumor necrosis factor ligand superfamily member 10
tumor necrosis factor superfamily member 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030421.2 Reference Coco_2.0 Primary Assembly

    Range
    22031767..22043527
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047156043.2 → XP_047011999.1  tumor necrosis factor ligand superfamily member 11 isoform X2

    UniProtKB/TrEMBL
    A0A979EWA4
    Related
    ENSIPUP00020023411.1, ENSIPUT00020027594.1

  2. XM_017470214.3 → XP_017325703.1  tumor necrosis factor ligand superfamily member 11 isoform X1

    UniProtKB/TrEMBL
    W5ULS8
    Related
    ENSIPUP00020023413.1, ENSIPUT00020027596.1
    Conserved Domains (1) summary
    cl00147
    Location:101 → 251
    TNF; Tumor Necrosis Factor; TNF superfamily members include the cytokines: TNF (TNF-alpha), LT (lymphotoxin-alpha, TNF-beta), CD40 ligand, Apo2L (TRAIL), Fas ligand, and osteoprotegerin (OPG) ligand. These proteins generally have an intracellular N-terminal ...
Nucleotide Protein
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