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egr3 early growth response 3 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108265748, updated on 20-Aug-2024

Summary

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Gene symbol
egr3
Gene description
early growth response 3
See related
EnsemblRapid:ENSIPUG00020022083
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 5 NC_030420.2 (4374811..4389112, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 5 NC_030420.1 (4274048..4288435, complement)

Chromosome 5 - NC_030420.2Genomic Context describing neighboring genes Neighboring gene acyl-CoA synthetase long chain family member 2 Neighboring gene bridging integrator 3 Neighboring gene phosphatidylethanolamine-binding protein 4 Neighboring gene rho-related BTB domain-containing protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
early growth response protein 3
Names
Early growth response protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030420.2 Reference Coco_2.0 Primary Assembly

    Range
    4374811..4389112 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017468402.3 → XP_017323891.1  early growth response protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A2D0R279

  2. XM_017468400.3 → XP_017323889.1  early growth response protein 3 isoform X1

    UniProtKB/TrEMBL
    W5U5Y9
    Related
    ENSIPUP00020043668.1, ENSIPUT00020053323.1
Nucleotide Protein
Heading Accession and Version

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