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zswim8 zinc finger, SWIM-type containing 8 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108263103, updated on 20-Aug-2024

Summary

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Gene symbol
zswim8
Gene description
zinc finger, SWIM-type containing 8
See related
EnsemblRapid:ENSIPUG00020011018
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 3
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 3 NC_030418.2 (25884279..25935030)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 3 NC_030418.1 (11183458..11234321, complement)

Chromosome 3 - NC_030418.2Genomic Context describing neighboring genes Neighboring gene neurotrypsin Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 1 Neighboring gene N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2a Neighboring gene arylsulfatase I

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Cul2-RING ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger SWIM domain-containing protein 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030418.2 Reference Coco_2.0 Primary Assembly

    Range
    25884279..25935030
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017463566.3 → XP_017319055.1  zinc finger SWIM domain-containing protein 8 isoform X1

    UniProtKB/TrEMBL
    A0A2D0QNM3

  2. XM_017463567.3 → XP_017319056.1  zinc finger SWIM domain-containing protein 8 isoform X2

    UniProtKB/TrEMBL
    A0A2D0QMV5
    Related
    ENSIPUP00020021295.1, ENSIPUT00020025027.1
Nucleotide Protein
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