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glipr2l GLI pathogenesis-related 2, like [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108256400, updated on 20-Aug-2024

Summary

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Gene symbol
glipr2l
Gene description
GLI pathogenesis-related 2, like
See related
EnsemblRapid:ENSIPUG00020016613
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 23
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 23 NC_030438.2 (13850322..13854507)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 23 NC_030438.1 (13160109..13164242)

Chromosome 23 - NC_030438.2Genomic Context describing neighboring genes Neighboring gene transmembrane protein 67 Neighboring gene cytochrome c oxidase subunit 6B1-like Neighboring gene uncharacterized LOC108256399 Neighboring gene NAC alpha domain containing Neighboring gene transforming growth factor beta regulator 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GLI pathogenesis-related 2, like
Names
Golgi-associated plant pathogenesis-related protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030438.2 Reference Coco_2.0 Primary Assembly

    Range
    13850322..13854507
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017453226.3 → XP_017308715.1  GLI pathogenesis-related 2, like

    UniProtKB/TrEMBL
    W5URR3

  2. XM_053674725.1 → XP_053530700.1  GLI pathogenesis-related 2, like

    UniProtKB/TrEMBL
    W5URR3
    Related
    ENSIPUP00020033891.1, ENSIPUT00020039643.1
Nucleotide Protein
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