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mef2cb myocyte enhancer factor 2cb [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108255865, updated on 20-Aug-2024

Summary

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Gene symbol
mef2cb
Gene description
myocyte enhancer factor 2cb
See related
EnsemblRapid:ENSIPUG00020012358
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
mef2c
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 22
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 22 NC_030437.2 (10484111..10552267)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 22 NC_030437.1 (10010226..10078057, complement)

Chromosome 22 - NC_030437.2Genomic Context describing neighboring genes Neighboring gene LysM, putative peptidoglycan-binding, domain containing 3 Neighboring gene polymerase (RNA) III (DNA directed) polypeptide G Neighboring gene metallo-beta-lactamase domain containing 2 Neighboring gene uncharacterized LOC108255391 Neighboring gene transmembrane protein 161B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone deacetylase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
myocyte enhancer factor 2cb
Names
myocyte enhancer factor 2C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030437.2 Reference Coco_2.0 Primary Assembly

    Range
    10484111..10552267
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047150050.2 → XP_047006006.1  myocyte enhancer factor 2cb isoform X7

    UniProtKB/TrEMBL
    A0A979ENJ7

  2. XM_053674332.1 → XP_053530307.1  myocyte enhancer factor 2cb isoform X8

    UniProtKB/TrEMBL
    A0A9F7R7Q5

  3. XM_047150046.2 → XP_047006002.1  myocyte enhancer factor 2cb isoform X2

    UniProtKB/TrEMBL
    A0A979EDL8
    Related
    ENSIPUP00020024342.1, ENSIPUT00020028661.1

  4. XM_047150047.2 → XP_047006003.1  myocyte enhancer factor 2cb isoform X4

    UniProtKB/TrEMBL
    A0A979EL05
    Related
    ENSIPUP00020024341.1, ENSIPUT00020028660.1

  5. XM_047150048.2 → XP_047006004.1  myocyte enhancer factor 2cb isoform X5

    UniProtKB/TrEMBL
    A0A979EAV6

  6. XM_053674331.1 → XP_053530306.1  myocyte enhancer factor 2cb isoform X6

    UniProtKB/TrEMBL
    A0A9F7R5E5

  7. XM_017452180.3 → XP_017307669.1  myocyte enhancer factor 2cb isoform X1

    UniProtKB/TrEMBL
    A0A2D0PRG4
    Related
    ENSIPUP00020024345.1, ENSIPUT00020028664.1
    Conserved Domains (2) summary
    cd00265
    Location:2 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam12347
    Location:107 → 152
    HJURP_C; Holliday junction regulator protein family C-terminal repeat

  8. XM_017452182.3 → XP_017307671.1  myocyte enhancer factor 2cb isoform X3

    UniProtKB/TrEMBL
    A0A2D0PQF9

  9. XM_017452181.3 → XP_017307670.1  myocyte enhancer factor 2cb isoform X1

    UniProtKB/TrEMBL
    A0A2D0PRG4
    Related
    ENSIPUP00020024340.1, ENSIPUT00020028659.1
    Conserved Domains (2) summary
    cd00265
    Location:2 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam12347
    Location:107 → 152
    HJURP_C; Holliday junction regulator protein family C-terminal repeat
Nucleotide Protein
Heading Accession and Version

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