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atp2c1 ATPase secretory pathway Ca2+ transporting 1 [ Kryptolebias marmoratus (mangrove rivulus) ]

Gene ID: 108250179, updated on 10-Apr-2024

Summary

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Gene symbol
atp2c1
Gene description
ATPase secretory pathway Ca2+ transporting 1
See related
EnsemblRapid:ENSKMAG00010002230
Gene type
protein coding
RefSeq status
MODEL
Organism
Kryptolebias marmoratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Kryptolebias
Orthologs
human zebrafish all
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Genomic context

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See atp2c1 in Genome Data Viewer
Location:
chromosome: LG16
Exon count:
28
Annotation release Status Assembly LG Location
102 current ASM164957v2 (GCF_001649575.2) LG16 NC_051445.1 (155931..183868, complement)
101 previous assembly ASM164957v1 (GCF_001649575.1) Unplaced Scaffold NW_016094802.1 (10532..34077, complement)

Linkage Group LG16 - NC_051445.1Genomic Context describing neighboring genes Neighboring gene CREB-regulated transcription coactivator 2 Neighboring gene zinc transporter ZIP1 Neighboring gene phosphoinositide 3-kinase regulatory subunit 4 Neighboring gene phosphoinositide 3-kinase regulatory subunit 4-like Neighboring gene collagen, type VI, alpha 4a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables P-type calcium transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular calcium ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in manganese ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium-transporting ATPase type 2C member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Kryptolebias marmoratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM164957v2 Primary Assembly

Genomic

  1. NC_051445.1 Reference ASM164957v2 Primary Assembly

    Range
    155931..183868 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037980146.1 → XP_037836074.1  calcium-transporting ATPase type 2C member 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q3B9M3
    Related
    ENSKMAP00010004266.1, ENSKMAT00010004523.1
    Conserved Domains (1) summary
    cd02085
    Location:80 → 922
    P-type_ATPase_SPCA; golgi-associated secretory pathway Ca(2+) transport ATPases, similar to human ATPase secretory pathway Ca(2+) transporting 1/hSPCA1 and Saccharomyces cerevisiae Ca(2+)/Mn(2+)-transporting P-type ATPase, Pmr1p

  2. XM_017439936.3 → XP_017295425.1  calcium-transporting ATPase type 2C member 1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q3B9M3, A0A3Q3BLH3
    Related
    ENSKMAP00010004241.1, ENSKMAT00010004495.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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