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rlim ring finger protein, LIM domain interacting [ Kryptolebias marmoratus (mangrove rivulus) ]

Gene ID: 108240574, updated on 10-Apr-2024

Summary

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Gene symbol
rlim
Gene description
ring finger protein, LIM domain interacting
See related
EnsemblRapid:ENSKMAG00010016429
Gene type
protein coding
RefSeq status
MODEL
Organism
Kryptolebias marmoratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Kryptolebias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG9
Exon count:
4
Annotation release Status Assembly LG Location
102 current ASM164957v2 (GCF_001649575.2) LG9 NC_051438.1 (14557053..14564877, complement)
101 previous assembly ASM164957v1 (GCF_001649575.1) Unplaced Scaffold NW_016094316.1 (1828583..1836408)

Linkage Group LG9 - NC_051438.1Genomic Context describing neighboring genes Neighboring gene cis-aconitate decarboxylase Neighboring gene glyoxalase domain containing 5 Neighboring gene neurite extension and migration factor b Neighboring gene ATP-binding cassette, sub-family B (MDR/TAP), member 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in random inactivation of X chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RLIM

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Kryptolebias marmoratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM164957v2 Primary Assembly

Genomic

  1. NC_051438.1 Reference ASM164957v2 Primary Assembly

    Range
    14557053..14564877 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017424146.3 → XP_017279635.1  E3 ubiquitin-protein ligase RLIM

    UniProtKB/TrEMBL
    A0A3Q3F5W4
    Related
    ENSKMAP00010036047.1, ENSKMAT00010037660.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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