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ltn1 listerin E3 ubiquitin protein ligase 1 [ Kryptolebias marmoratus (mangrove rivulus) ]

Gene ID: 108237047, updated on 10-Apr-2024

Summary

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Gene symbol
ltn1
Gene description
listerin E3 ubiquitin protein ligase 1
See related
EnsemblRapid:ENSKMAG00010017898
Gene type
protein coding
RefSeq status
MODEL
Organism
Kryptolebias marmoratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Kryptolebias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG13
Exon count:
32
Annotation release Status Assembly LG Location
102 current ASM164957v2 (GCF_001649575.2) LG13 NC_051442.1 (12209005..12222025, complement)
101 previous assembly ASM164957v1 (GCF_001649575.1) Unplaced Scaffold NW_016094282.1 (1386761..1399899)

Linkage Group LG13 - NC_051442.1Genomic Context describing neighboring genes Neighboring gene PAX3 and PAX7 binding protein 1 Neighboring gene cell adhesion molecule 2a Neighboring gene CCAAT enhancer binding protein beta Neighboring gene ferroxidase HEPHL1 Neighboring gene transmembrane protein 135

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ribosomal large subunit binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in rescue of stalled ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosome-associated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RQC complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase listerin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Kryptolebias marmoratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM164957v2 Primary Assembly

Genomic

  1. NC_051442.1 Reference ASM164957v2 Primary Assembly

    Range
    12209005..12222025 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017418227.3 → XP_017273716.1  E3 ubiquitin-protein ligase listerin

    UniProtKB/TrEMBL
    A0A3Q2ZSE2
    Related
    ENSKMAP00010039343.1, ENSKMAT00010041201.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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