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SUPT5H SPT5 homolog, DSIF elongation factor subunit [ Rousettus aegyptiacus (Egyptian rousette) ]

Gene ID: 107521801, updated on 30-Mar-2024

Summary

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Gene symbol
SUPT5H
Gene description
SPT5 homolog, DSIF elongation factor subunit
Locus tag
HJG63_018717
Gene type
protein coding
RefSeq status
MODEL
Organism
Rousettus aegyptiacus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Rousettinae; Rousettus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
30
Annotation release Status Assembly Chr Location
101 current mRouAeg1.p (GCF_014176215.1) Unplaced Scaffold NW_023416289.1 (40033901..40059785)
100 previous assembly Raegyp2.0 (GCF_001466805.2) Unplaced Scaffold NW_015494852.1 (948285..974127, complement)

NW_023416289.1Genomic Context describing neighboring genes Neighboring gene pleckstrin homology and RhoGEF domain containing G2 Neighboring gene ribosomal protein S16 Neighboring gene translocase of inner mitochondrial membrane 50 Neighboring gene delta like canonical Notch ligand 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription elongation-coupled chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of DSIF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription elongation factor SPT5
Names
SPT5-like protein, DSIF elongation factor subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rousettus aegyptiacus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRouAeg1.p

Genomic

  1. NW_023416289.1 Reference mRouAeg1.p

    Range
    40033901..40059785
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016166813.2 → XP_016022299.1  transcription elongation factor SPT5 isoform X1

    UniProtKB/TrEMBL
    A0A7J8CLX6, A0A7J8CM26
    Conserved Domains (5) summary
    cd09888
    Location:177 → 264
    NGN_Euk; Eukaryotic N-Utilization Substance G (NusG) N-terminal (NGN) domain, including plant KTF1 (KOW domain-containing Transcription Factor 1)
    COG5164
    Location:333 → 964
    SPT5; Transcription elongation factor [Transcription]
    cd06081
    Location:275 → 312
    KOW_Spt5_1; KOW domain of Spt5, repeat 1
    cd06086
    Location:1027 → 1083
    KOW_Spt5_6; KOW domain of Spt5, repeat 6
    pfam11942
    Location:92 → 171
    Spt5_N; Spt5 transcription elongation factor, acidic N-terminal

  2. XM_016166816.2 → XP_016022302.1  transcription elongation factor SPT5 isoform X2

    UniProtKB/TrEMBL
    A0A7J8CLX6, A0A7J8CM32
    Conserved Domains (5) summary
    cd09888
    Location:173 → 260
    NGN_Euk; Eukaryotic N-Utilization Substance G (NusG) N-terminal (NGN) domain, including plant KTF1 (KOW domain-containing Transcription Factor 1)
    COG5164
    Location:329 → 960
    SPT5; Transcription elongation factor [Transcription]
    cd06081
    Location:271 → 308
    KOW_Spt5_1; KOW domain of Spt5, repeat 1
    cd06086
    Location:1023 → 1079
    KOW_Spt5_6; KOW domain of Spt5, repeat 6
    pfam11942
    Location:74 → 167
    Spt5_N; Spt5 transcription elongation factor, acidic N-terminal

  3. XM_016166815.2 → XP_016022301.1  transcription elongation factor SPT5 isoform X1

    UniProtKB/TrEMBL
    A0A7J8CLX6, A0A7J8CM26
    Conserved Domains (5) summary
    cd09888
    Location:177 → 264
    NGN_Euk; Eukaryotic N-Utilization Substance G (NusG) N-terminal (NGN) domain, including plant KTF1 (KOW domain-containing Transcription Factor 1)
    COG5164
    Location:333 → 964
    SPT5; Transcription elongation factor [Transcription]
    cd06081
    Location:275 → 312
    KOW_Spt5_1; KOW domain of Spt5, repeat 1
    cd06086
    Location:1027 → 1083
    KOW_Spt5_6; KOW domain of Spt5, repeat 6
    pfam11942
    Location:92 → 171
    Spt5_N; Spt5 transcription elongation factor, acidic N-terminal
Nucleotide Protein
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