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btaf1 BTAF1 RNA polymerase II, B-TFIID transcription factor-associated [ Nothobranchius furzeri (turquoise killifish) ]

Gene ID: 107395223, updated on 6-Jun-2024

Summary

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Gene symbol
btaf1
Gene description
BTAF1 RNA polymerase II, B-TFIID transcription factor-associated
See related
Ensembl:ENSNFUG00015020002
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothobranchius furzeri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Nothobranchiidae; Nothobranchius
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
38
Annotation release Status Assembly Chr Location
RS_2023_03 current UI_Nfuz_MZM_1.0 (GCF_027789165.1) Unplaced Scaffold NW_026542250.1 (90526..212671)
100 previous assembly Nfu_20140520 (GCF_001465895.1) Unplaced Scaffold NW_015443677.1 (11898..104859, complement)

NW_026542250.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129162107 Neighboring gene uncharacterized LOC129162108 Neighboring gene uncharacterized LOC129162109

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels. Petzold A, et al. BMC Genomics, 2013 Mar 16. PMID 23496936, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables TBP-class protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TATA-binding protein-associated factor 172
Names
B-TFIID TATA-box binding protein associated factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027789165.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UI_Nfuz_MZM_1.0 Primary Assembly

Genomic

  1. NW_026542250.1 Reference UI_Nfuz_MZM_1.0 Primary Assembly

    Range
    90526..212671
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054738604.1 → XP_054594579.1  TATA-binding protein-associated factor 172

    UniProtKB/TrEMBL
    A0A1A8AXH1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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