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bmal1a basic helix-loop-helix ARNT like 1a [ Nothobranchius furzeri (turquoise killifish) ]

Gene ID: 107389237, updated on 6-Jun-2024

Summary

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Gene symbol
bmal1a
Gene description
basic helix-loop-helix ARNT like 1a
See related
Ensembl:ENSNFUG00015020853
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothobranchius furzeri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Nothobranchiidae; Nothobranchius
Also known as
arntl; arntl1a
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2023_03 current UI_Nfuz_MZM_1.0 (GCF_027789165.1) Unplaced Scaffold NW_026539937.1 (38772114..38811273)
100 previous assembly Nfu_20140520 (GCF_001465895.1) sgr13 NC_029661.1 (41755607..41793735)

NW_026539937.1Genomic Context describing neighboring genes Neighboring gene protein O-glucosyltransferase 3 Neighboring gene PPFIA binding protein 2b Neighboring gene RAB15 effector protein Neighboring gene BTB/POZ domain-containing protein 10 Neighboring gene parathyroid hormone-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels. Petzold A, et al. BMC Genomics, 2013 Mar 16. PMID 23496936, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in circadian rhythm IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of aryl hydrocarbon receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
basic helix-loop-helix ARNT like 1a
Names
aryl hydrocarbon receptor nuclear translocator like
aryl hydrocarbon receptor nuclear translocator-like 1a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027789165.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UI_Nfuz_MZM_1.0 Primary Assembly

Genomic

  1. NW_026539937.1 Reference UI_Nfuz_MZM_1.0 Primary Assembly

    Range
    38772114..38811273
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054733422.1 → XP_054589397.1  basic helix-loop-helix ARNT like 1a

    UniProtKB/TrEMBL
    A0A1A8U2Y2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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