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arntl1a aryl hydrocarbon receptor nuclear translocator-like 1a [ Danio rerio (zebrafish) ]

Gene ID: 58098, updated on 3-Oct-2019

Summary

Official Symbol
arntl1aprovided by ZNC
Official Full Name
aryl hydrocarbon receptor nuclear translocator-like 1aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-000509-1
See related
Ensembl:ENSDARG00000006791
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
bmal1; zfBMAL1; wu:fa04g03

Genomic context

See arntl1a in Genome Data Viewer
Location:
chromosome: 25
Exon count:
20
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (17893784..17918860, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (17797384..17822457, complement)
103 previous assembly Zv9 (GCF_000002035.4) 25 NC_007136.5 (18381074..18406162, complement)

Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene BTB (POZ) domain containing 10a Neighboring gene parathyroid hormone 1a Neighboring gene zgc:103499 Neighboring gene BLOC-1 related complex subunit 5 Neighboring gene centrosomal protein 290

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from BioSystems

  • Herpes simplex infection, organism-specific biosystem (from KEGG)
    Herpes simplex infection, organism-specific biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...
  • Herpes simplex infection, conserved biosystem (from KEGG)
    Herpes simplex infection, conserved biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
contributes_to DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 
contributes_to protein heterodimerization activity NAS
Non-traceable Author Statement
more info
PubMed 
transcription regulatory region sequence-specific DNA binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
circadian rhythm IGI
Inferred from Genetic Interaction
more info
PubMed 
negative regulation of transcription, DNA-templated IDA
Inferred from Direct Assay
more info
PubMed 
photoperiodism IEP
Inferred from Expression Pattern
more info
PubMed 
positive regulation of transcription, DNA-templated IGI
Inferred from Genetic Interaction
more info
PubMed 
positive regulation of transcription, DNA-templated IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
regulation of vasculature development IGI
Inferred from Genetic Interaction
more info
PubMed 
regulation of vasculature development IMP
Inferred from Mutant Phenotype
more info
PubMed 
response to light stimulus IGI
Inferred from Genetic Interaction
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 
transcription factor complex IDA
Inferred from Direct Assay
more info
PubMed 
transcription factor complex IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
aryl hydrocarbon receptor nuclear translocator-like 1a
Names
bmal1a
brain and muscle ARNT-like 1
hif1b

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_131577.1NP_571652.1  aryl hydrocarbon receptor nuclear translocator-like 1a

    See identical proteins and their annotated locations for NP_571652.1

    Status: PROVISIONAL

    Source sequence(s)
    AF144689
    UniProtKB/TrEMBL
    Q9I879
    Related
    ENSDARP00000124722.1, ENSDART00000148660.3
    Conserved Domains (5) summary
    smart00091
    Location:153212
    PAS; PAS domain
    cd00130
    Location:345440
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00010
    Location:78130
    HLH; Helix-loop-helix DNA-binding domain
    pfam00989
    Location:150257
    PAS; PAS fold
    pfam14598
    Location:343446
    PAS_11; PAS domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007136.7 Reference GRCz11 Primary Assembly

    Range
    17893784..17918860 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005163022.4XP_005163079.1  aryl hydrocarbon receptor nuclear translocator-like 1a isoform X1

    See identical proteins and their annotated locations for XP_005163079.1

    UniProtKB/TrEMBL
    Q9I879
    Related
    ENSDARP00000004223.9, ENSDART00000023959.10
    Conserved Domains (5) summary
    smart00091
    Location:153212
    PAS; PAS domain
    cd00130
    Location:345440
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00010
    Location:78130
    HLH; Helix-loop-helix DNA-binding domain
    pfam00989
    Location:150257
    PAS; PAS fold
    pfam14598
    Location:343446
    PAS_11; PAS domain
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