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hacd4 3-hydroxyacyl-CoA dehydratase 4 [ Nothobranchius furzeri (turquoise killifish) ]

Gene ID: 107384754, updated on 14-Mar-2024

Summary

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Gene symbol
hacd4
Gene description
3-hydroxyacyl-CoA dehydratase 4
See related
Ensembl:ENSNFUG00015019119
Gene type
protein coding
RefSeq status
MODEL
Organism
Nothobranchius furzeri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Nothobranchiidae; Nothobranchius
Orthologs
human zebrafish all
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Genomic context

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See hacd4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_03 current UI_Nfuz_MZM_1.0 (GCF_027789165.1) Unplaced Scaffold NW_026539915.1 (42091299..42098078, complement)
100 previous assembly Nfu_20140520 (GCF_001465895.1) sgr10 NC_029658.1 (10121495..10127982)

NW_026539915.1Genomic Context describing neighboring genes Neighboring gene histone H2A.Z Neighboring gene MLLT3 super elongation complex subunit Neighboring gene focadhesin Neighboring gene chromosome unknown C4orf54 homolog Neighboring gene tRNA methyltransferase 10A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels. Petzold A, et al. BMC Genomics, 2013 Mar 16. PMID 23496936, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3-hydroxyacyl-CoA dehydratase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in very long-chain fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027789165.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UI_Nfuz_MZM_1.0 Primary Assembly

Genomic

  1. NW_026539915.1 Reference UI_Nfuz_MZM_1.0 Primary Assembly

    Range
    42091299..42098078 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015958194.2 → XP_015813680.1  very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4

    UniProtKB/TrEMBL
    A0A1A7Z6U7, A0A9D2XSQ3
    Related
    ENSNFUP00015039682.1
    Conserved Domains (1) summary
    cl02156
    Location:54 → 204
    PTPLA; Protein tyrosine phosphatase-like protein, PTPLA
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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