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STAU1 staufen double-stranded RNA binding protein 1 [ Coturnix japonica (Japanese quail) ]

Gene ID: 107322981, updated on 14-Mar-2024

Summary

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Gene symbol
STAU1
Gene description
staufen double-stranded RNA binding protein 1
See related
Ensembl:ENSCJPG00005002450
Gene type
protein coding
RefSeq status
MODEL
Organism
Coturnix japonica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Perdicinae; Coturnix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 20
Exon count:
17
Annotation release Status Assembly Chr Location
101 current Coturnix japonica 2.1 (GCF_001577835.2) 20 NC_029535.1 (5665661..5690897)

Chromosome 20 - NC_029535.1Genomic Context describing neighboring genes Neighboring gene ADP ribosylation factor guanine nucleotide exchange factor 2 Neighboring gene chromosome segregation 1 like Neighboring gene uncharacterized LOC107322983 Neighboring gene small nucleolar SNORD12/SNORD106

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029535.1 Chromosome 20 Reference Coturnix japonica 2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
double-stranded RNA-binding protein Staufen homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coturnix japonica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coturnix japonica 2.1 Primary Assembly

Genomic

  1. NC_029535.1 Reference Coturnix japonica 2.1 Primary Assembly

    Range
    5665661..5690897
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015881631.2 → XP_015737117.1  double-stranded RNA-binding protein Staufen homolog 1 isoform X1

    Conserved Domains (2) summary
    smart00358
    Location:383 → 449
    DSRM; Double-stranded RNA binding motif
    pfam16482
    Location:543 → 652
    Staufen_C; Staufen C-terminal domain

  2. XM_032448532.1 → XP_032304423.1  double-stranded RNA-binding protein Staufen homolog 1 isoform X7

    Conserved Domains (5) summary
    pfam16482
    Location:543 → 652
    Staufen_C; Staufen C-terminal domain
    cd19879
    Location:73 → 138
    DSRM_STAU1_rpt1; first double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 1 (Staufen 1) and similar proteins
    cd19881
    Location:172 → 236
    DSRM_STAU1_rpt2; second double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 1 (Staufen 1) and similar proteins
    cd19885
    Location:372 → 450
    DSRM_STAU1_rpt4; fourth double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 1 (Staufen 1) and similar proteins
    cl00054
    Location:273 → 345
    DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily

  3. XM_015881637.2 → XP_015737123.1  double-stranded RNA-binding protein Staufen homolog 1 isoform X5

    Conserved Domains (2) summary
    smart00358
    Location:383 → 449
    DSRM; Double-stranded RNA binding motif
    pfam16482
    Location:543 → 652
    Staufen_C; Staufen C-terminal domain

  4. XM_032448533.1 → XP_032304424.1  double-stranded RNA-binding protein Staufen homolog 1 isoform X7

    Conserved Domains (5) summary
    pfam16482
    Location:543 → 652
    Staufen_C; Staufen C-terminal domain
    cd19879
    Location:73 → 138
    DSRM_STAU1_rpt1; first double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 1 (Staufen 1) and similar proteins
    cd19881
    Location:172 → 236
    DSRM_STAU1_rpt2; second double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 1 (Staufen 1) and similar proteins
    cd19885
    Location:372 → 450
    DSRM_STAU1_rpt4; fourth double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 1 (Staufen 1) and similar proteins
    cl00054
    Location:273 → 345
    DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily

  5. XM_015881640.2 → XP_015737126.1  double-stranded RNA-binding protein Staufen homolog 1 isoform X9

    Conserved Domains (2) summary
    smart00358
    Location:383 → 449
    DSRM; Double-stranded RNA binding motif
    pfam16482
    Location:543 → 652
    Staufen_C; Staufen C-terminal domain

  6. XM_015881633.2 → XP_015737119.1  double-stranded RNA-binding protein Staufen homolog 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C2SRW7
    Related
    ENSCJPP00005002250.1, ENSCJPT00005004074.1
    Conserved Domains (2) summary
    smart00358
    Location:276 → 340
    DSRM; Double-stranded RNA binding motif
    pfam16482
    Location:537 → 646
    Staufen_C; Staufen C-terminal domain

  7. XM_015881638.2 → XP_015737124.1  double-stranded RNA-binding protein Staufen homolog 1 isoform X6

    Conserved Domains (2) summary
    smart00358
    Location:350 → 416
    DSRM; Double-stranded RNA binding motif
    pfam16482
    Location:510 → 619
    Staufen_C; Staufen C-terminal domain

  8. XM_015881639.2 → XP_015737125.1  double-stranded RNA-binding protein Staufen homolog 1 isoform X8

    UniProtKB/TrEMBL
    A0A8C2SQE7
    Related
    ENSCJPP00005002254.1, ENSCJPT00005004080.1
    Conserved Domains (2) summary
    smart00358
    Location:344 → 410
    DSRM; Double-stranded RNA binding motif
    pfam16482
    Location:504 → 613
    Staufen_C; Staufen C-terminal domain

  9. XM_015881635.2 → XP_015737121.1  double-stranded RNA-binding protein Staufen homolog 1 isoform X3

    Conserved Domains (2) summary
    smart00358
    Location:383 → 449
    DSRM; Double-stranded RNA binding motif
    pfam16482
    Location:543 → 652
    Staufen_C; Staufen C-terminal domain

  10. XM_015881636.2 → XP_015737122.1  double-stranded RNA-binding protein Staufen homolog 1 isoform X4

    UniProtKB/TrEMBL
    A0A8C2STJ8
    Related
    ENSCJPP00005002253.1, ENSCJPT00005004078.1
    Conserved Domains (2) summary
    smart00358
    Location:276 → 340
    DSRM; Double-stranded RNA binding motif
    pfam16482
    Location:537 → 646
    Staufen_C; Staufen C-terminal domain

  11. XM_015881632.2 → XP_015737118.1  double-stranded RNA-binding protein Staufen homolog 1 isoform X1

    Conserved Domains (2) summary
    smart00358
    Location:383 → 449
    DSRM; Double-stranded RNA binding motif
    pfam16482
    Location:543 → 652
    Staufen_C; Staufen C-terminal domain
Nucleotide Protein
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