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LRRC4C leucine rich repeat containing 4C [ Coturnix japonica (Japanese quail) ]

Gene ID: 107314838, updated on 14-Mar-2024

Summary

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Gene symbol
LRRC4C
Gene description
leucine rich repeat containing 4C
See related
Ensembl:ENSCJPG00005010806
Gene type
protein coding
RefSeq status
MODEL
Organism
Coturnix japonica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Perdicinae; Coturnix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
13
Annotation release Status Assembly Chr Location
101 current Coturnix japonica 2.1 (GCF_001577835.2) 5 NC_029520.1 (18214535..18628094, complement)

Chromosome 5 - NC_029520.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107314757 Neighboring gene uncharacterized LOC116653503 Neighboring gene uncharacterized LOC107314806 Neighboring gene apoptosis inhibitor 5 Neighboring gene tetratricopeptide repeat domain 17

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029520.1 Chromosome 5 Reference Coturnix japonica 2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in modulation of chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic membrane adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in glutamatergic synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic density membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat-containing protein 4C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coturnix japonica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coturnix japonica 2.1 Primary Assembly

Genomic

  1. NC_029520.1 Reference Coturnix japonica 2.1 Primary Assembly

    Range
    18214535..18628094 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032444957.1 → XP_032300848.1  leucine-rich repeat-containing protein 4C

    UniProtKB/TrEMBL
    A0A8C2TJT1
    Conserved Domains (5) summary
    smart00082
    Location:300 → 350
    LRRCT; Leucine rich repeat C-terminal domain
    COG4886
    Location:77 → 301
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:78 → 101
    LRR_RI; leucine-rich repeat [structural motif]
    cd00096
    Location:356 → 359
    Ig; Ig strand A [structural motif]
    cl11960
    Location:353 → 442
    Ig; Immunoglobulin domain

  2. XM_032444954.1 → XP_032300845.1  leucine-rich repeat-containing protein 4C

    UniProtKB/TrEMBL
    A0A8C2TJT1
    Related
    ENSCJPP00005012713.1, ENSCJPT00005018367.1
    Conserved Domains (5) summary
    smart00082
    Location:300 → 350
    LRRCT; Leucine rich repeat C-terminal domain
    COG4886
    Location:77 → 301
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:78 → 101
    LRR_RI; leucine-rich repeat [structural motif]
    cd00096
    Location:356 → 359
    Ig; Ig strand A [structural motif]
    cl11960
    Location:353 → 442
    Ig; Immunoglobulin domain

  3. XM_032444951.1 → XP_032300842.1  leucine-rich repeat-containing protein 4C

    UniProtKB/TrEMBL
    A0A8C2TJT1
    Conserved Domains (5) summary
    smart00082
    Location:300 → 350
    LRRCT; Leucine rich repeat C-terminal domain
    COG4886
    Location:77 → 301
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:78 → 101
    LRR_RI; leucine-rich repeat [structural motif]
    cd00096
    Location:356 → 359
    Ig; Ig strand A [structural motif]
    cl11960
    Location:353 → 442
    Ig; Immunoglobulin domain

  4. XM_015864561.2 → XP_015720047.1  leucine-rich repeat-containing protein 4C

    UniProtKB/TrEMBL
    A0A8C2TJT1
    Conserved Domains (5) summary
    smart00082
    Location:300 → 350
    LRRCT; Leucine rich repeat C-terminal domain
    COG4886
    Location:77 → 301
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:78 → 101
    LRR_RI; leucine-rich repeat [structural motif]
    cd00096
    Location:356 → 359
    Ig; Ig strand A [structural motif]
    cl11960
    Location:353 → 442
    Ig; Immunoglobulin domain

  5. XM_032444950.1 → XP_032300841.1  leucine-rich repeat-containing protein 4C

    UniProtKB/TrEMBL
    A0A8C2TJT1
    Conserved Domains (5) summary
    smart00082
    Location:300 → 350
    LRRCT; Leucine rich repeat C-terminal domain
    COG4886
    Location:77 → 301
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:78 → 101
    LRR_RI; leucine-rich repeat [structural motif]
    cd00096
    Location:356 → 359
    Ig; Ig strand A [structural motif]
    cl11960
    Location:353 → 442
    Ig; Immunoglobulin domain

  6. XM_032444955.1 → XP_032300846.1  leucine-rich repeat-containing protein 4C

    UniProtKB/TrEMBL
    A0A8C2TJT1
    Conserved Domains (5) summary
    smart00082
    Location:300 → 350
    LRRCT; Leucine rich repeat C-terminal domain
    COG4886
    Location:77 → 301
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:78 → 101
    LRR_RI; leucine-rich repeat [structural motif]
    cd00096
    Location:356 → 359
    Ig; Ig strand A [structural motif]
    cl11960
    Location:353 → 442
    Ig; Immunoglobulin domain

  7. XM_032444953.1 → XP_032300844.1  leucine-rich repeat-containing protein 4C

    UniProtKB/TrEMBL
    A0A8C2TJT1
    Conserved Domains (5) summary
    smart00082
    Location:300 → 350
    LRRCT; Leucine rich repeat C-terminal domain
    COG4886
    Location:77 → 301
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:78 → 101
    LRR_RI; leucine-rich repeat [structural motif]
    cd00096
    Location:356 → 359
    Ig; Ig strand A [structural motif]
    cl11960
    Location:353 → 442
    Ig; Immunoglobulin domain

  8. XM_032444956.1 → XP_032300847.1  leucine-rich repeat-containing protein 4C

    UniProtKB/TrEMBL
    A0A8C2TJT1
    Conserved Domains (5) summary
    smart00082
    Location:300 → 350
    LRRCT; Leucine rich repeat C-terminal domain
    COG4886
    Location:77 → 301
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:78 → 101
    LRR_RI; leucine-rich repeat [structural motif]
    cd00096
    Location:356 → 359
    Ig; Ig strand A [structural motif]
    cl11960
    Location:353 → 442
    Ig; Immunoglobulin domain

  9. XM_032444952.1 → XP_032300843.1  leucine-rich repeat-containing protein 4C

    UniProtKB/TrEMBL
    A0A8C2TJT1
    Conserved Domains (5) summary
    smart00082
    Location:300 → 350
    LRRCT; Leucine rich repeat C-terminal domain
    COG4886
    Location:77 → 301
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:78 → 101
    LRR_RI; leucine-rich repeat [structural motif]
    cd00096
    Location:356 → 359
    Ig; Ig strand A [structural motif]
    cl11960
    Location:353 → 442
    Ig; Immunoglobulin domain

  10. XM_015864564.2 → XP_015720050.1  leucine-rich repeat-containing protein 4C

    UniProtKB/TrEMBL
    A0A8C2TJT1
    Conserved Domains (5) summary
    smart00082
    Location:300 → 350
    LRRCT; Leucine rich repeat C-terminal domain
    COG4886
    Location:77 → 301
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:78 → 101
    LRR_RI; leucine-rich repeat [structural motif]
    cd00096
    Location:356 → 359
    Ig; Ig strand A [structural motif]
    cl11960
    Location:353 → 442
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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