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NOD1 nucleotide binding oligomerization domain containing 1 [ Coturnix japonica (Japanese quail) ]

Gene ID: 107309322, updated on 14-Mar-2024

Summary

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Gene symbol
NOD1
Gene description
nucleotide binding oligomerization domain containing 1
See related
Ensembl:ENSCJPG00005012848
Gene type
protein coding
RefSeq status
MODEL
Organism
Coturnix japonica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Perdicinae; Coturnix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
13
Annotation release Status Assembly Chr Location
101 current Coturnix japonica 2.1 (GCF_001577835.2) 2 NC_029517.1 (37964134..37988830)

Chromosome 2 - NC_029517.1Genomic Context describing neighboring genes Neighboring gene ectonucleoside triphosphate diphosphohydrolase 3-like Neighboring gene gamma-glutamylcyclotransferase Neighboring gene zinc and ring finger 2 Neighboring gene uncharacterized LOC107309324

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029517.1 Chromosome 2 Reference Coturnix japonica 2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nucleotide-binding oligomerization domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coturnix japonica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coturnix japonica 2.1 Primary Assembly

Genomic

  1. NC_029517.1 Reference Coturnix japonica 2.1 Primary Assembly

    Range
    37964134..37988830
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015854019.2 → XP_015709505.1  nucleotide-binding oligomerization domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C2TNP1, A0A8C2TNV2
    Related
    ENSCJPP00005015510.1, ENSCJPT00005021986.1
    Conserved Domains (5) summary
    cd00116
    Location:654 → 939
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    cd08324
    Location:26 → 110
    CARD_NOD1_CARD4; Caspase activation and recruitment domain similar to that found in NOD1
    sd00033
    Location:706 → 727
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:678 → 703
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam05729
    Location:202 → 372
    NACHT; NACHT domain

  2. XM_015854021.2 → XP_015709507.1  nucleotide-binding oligomerization domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C2TNP1, A0A8C2YC46
    Related
    ENSCJPP00005015512.1, ENSCJPT00005021988.1
    Conserved Domains (5) summary
    cd00116
    Location:654 → 914
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    cd08324
    Location:26 → 110
    CARD_NOD1_CARD4; Caspase activation and recruitment domain similar to that found in NOD1
    sd00033
    Location:706 → 727
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:678 → 703
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam05729
    Location:202 → 372
    NACHT; NACHT domain

  3. XM_015854020.2 → XP_015709506.1  nucleotide-binding oligomerization domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C2TNP1, A0A8C2TNV2
    Conserved Domains (5) summary
    cd00116
    Location:654 → 939
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    cd08324
    Location:26 → 110
    CARD_NOD1_CARD4; Caspase activation and recruitment domain similar to that found in NOD1
    sd00033
    Location:706 → 727
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:678 → 703
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam05729
    Location:202 → 372
    NACHT; NACHT domain

RNA

  1. XR_004306061.1 RNA Sequence

  2. XR_004306062.1 RNA Sequence

Nucleotide Protein
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