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HDAC9 histone deacetylase 9 [ Coturnix japonica (Japanese quail) ]

Gene ID: 107309170, updated on 14-Mar-2024

Summary

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Gene symbol
HDAC9
Gene description
histone deacetylase 9
See related
Ensembl:ENSCJPG00005011923
Gene type
protein coding
RefSeq status
MODEL
Organism
Coturnix japonica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Perdicinae; Coturnix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
31
Annotation release Status Assembly Chr Location
101 current Coturnix japonica 2.1 (GCF_001577835.2) 2 NC_029517.1 (26703800..27144255)

Chromosome 2 - NC_029517.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116653010 Neighboring gene sorting nexin 13 Neighboring gene twist family bHLH transcription factor 1 Neighboring gene Fer3 like bHLH transcription factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029517.1 Chromosome 2 Reference Coturnix japonica 2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone deacetylase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coturnix japonica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coturnix japonica 2.1 Primary Assembly

Genomic

  1. NC_029517.1 Reference Coturnix japonica 2.1 Primary Assembly

    Range
    26703800..27144255
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015853723.2 → XP_015709209.1  histone deacetylase 9 isoform X1

    UniProtKB/TrEMBL
    A0A8C2TKU4, A0A8C2TKY7
    Related
    ENSCJPP00005014262.1, ENSCJPT00005020348.1
    Conserved Domains (2) summary
    cd10163
    Location:59 → 148
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
    cl17011
    Location:654 → 1073
    Arginase_HDAC; Arginase-like and histone-like hydrolases

  2. XM_015853724.2 → XP_015709210.1  histone deacetylase 9 isoform X2

    UniProtKB/TrEMBL
    A0A8C2TJ07, A0A8C2TKU4
    Related
    ENSCJPP00005014270.1, ENSCJPT00005020356.1
    Conserved Domains (2) summary
    cd10163
    Location:38 → 127
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
    cl17011
    Location:633 → 1052
    Arginase_HDAC; Arginase-like and histone-like hydrolases

  3. XM_015853726.2 → XP_015709212.1  histone deacetylase 9 isoform X4

    UniProtKB/TrEMBL
    A0A8C2TKU4
    Conserved Domains (2) summary
    cd10163
    Location:38 → 124
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
    cl17011
    Location:630 → 1049
    Arginase_HDAC; Arginase-like and histone-like hydrolases

  4. XM_015853725.2 → XP_015709211.1  histone deacetylase 9 isoform X3

    UniProtKB/TrEMBL
    A0A8C2TKU4, A0A8C2TLY0
    Related
    ENSCJPP00005014269.1, ENSCJPT00005020355.1
    Conserved Domains (2) summary
    cd10163
    Location:38 → 127
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
    cl17011
    Location:633 → 1052
    Arginase_HDAC; Arginase-like and histone-like hydrolases

  5. XM_032443180.1 → XP_032299071.1  histone deacetylase 9 isoform X10

    UniProtKB/TrEMBL
    A0A8C2TKZ7
    Related
    ENSCJPP00005014274.1, ENSCJPT00005020360.1
    Conserved Domains (1) summary
    cd10163
    Location:38 → 127
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

  6. XM_032443178.1 → XP_032299069.1  histone deacetylase 9 isoform X7

    UniProtKB/TrEMBL
    A0A8C2TKZ7
    Related
    ENSCJPP00005014273.1, ENSCJPT00005020359.1
    Conserved Domains (1) summary
    cl25407
    Location:38 → 127
    ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

  7. XM_015853728.2 → XP_015709214.1  histone deacetylase 9 isoform X8

    UniProtKB/TrEMBL
    A0A8C2TKZ7
    Conserved Domains (1) summary
    cl23765
    Location:38 → 124
    iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits

  8. XM_032443179.1 → XP_032299070.1  histone deacetylase 9 isoform X9

    UniProtKB/TrEMBL
    A0A8C2TKZ7
    Conserved Domains (1) summary
    cl25407
    Location:38 → 124
    ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

  9. XM_032443177.1 → XP_032299068.1  histone deacetylase 9 isoform X6

    UniProtKB/TrEMBL
    A0A8C2TKU4
    Conserved Domains (2) summary
    cd10163
    Location:7 → 96
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
    cl17011
    Location:600 → 1019
    Arginase_HDAC; Arginase-like and histone-like hydrolases

  10. XM_032443176.1 → XP_032299067.1  histone deacetylase 9 isoform X6

    UniProtKB/TrEMBL
    A0A8C2TKU4
    Conserved Domains (2) summary
    cd10163
    Location:7 → 96
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
    cl17011
    Location:600 → 1019
    Arginase_HDAC; Arginase-like and histone-like hydrolases

  11. XM_032443175.1 → XP_032299066.1  histone deacetylase 9 isoform X5

    UniProtKB/TrEMBL
    A0A8C2TKU4
    Conserved Domains (2) summary
    cd10163
    Location:33 → 122
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
    cl17011
    Location:628 → 1047
    Arginase_HDAC; Arginase-like and histone-like hydrolases
Nucleotide Protein
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