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Slitrk5 SLIT and NTRK like family member 5 [ Marmota marmota marmota (Alpine marmot) ]

Gene ID: 107140835, updated on 1-Aug-2024

Summary

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Gene symbol
Slitrk5
Gene description
SLIT and NTRK like family member 5
See related
Ensembl:ENSMMMG00000021362
Gene type
protein coding
RefSeq status
MODEL
Organism
Marmota marmota marmota (sub-species: marmota)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Marmota
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
101 current marMar (GCF_001458135.2) Unplaced Scaffold NW_025999932.1 (21062971..21071875, complement)
100 previous assembly marMar2.1 (GCF_001458135.1) Unplaced Scaffold NW_015351223.1 (21064674..21070985, complement)

NW_025999932.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC125615981 Neighboring gene uncharacterized LOC125615982 Neighboring gene uncharacterized LOC125616089 Neighboring gene STARD3 N-terminal-like protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of presynapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SLIT and NTRK-like protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Marmota marmota marmota Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference marMar

Genomic

  1. NW_025999932.1 Reference marMar

    Range
    21062971..21071875 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048800756.1 → XP_048656713.1  SLIT and NTRK-like protein 5 isoform X2

    UniProtKB/TrEMBL
    A0AAJ8A0W9

  2. XM_048800754.1 → XP_048656711.1  SLIT and NTRK-like protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A8C6EYG2

  3. XM_048800755.1 → XP_048656712.1  SLIT and NTRK-like protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A8C6EYG2

  4. XM_015483999.2 → XP_015339485.1  SLIT and NTRK-like protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A8C6EYG2
    Related
    ENSMMMP00000024409.1
    Conserved Domains (6) summary
    smart00082
    Location:235 → 273
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:435 → 458
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:62 → 79
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12799
    Location:458 → 498
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:433 → 493
    LRR_8; Leucine rich repeat
    cl15307
    Location:563 → 599
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain
Nucleotide Protein
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