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zc3h12b zinc finger CCCH-type containing 12B [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107103670, updated on 14-Mar-2024

Summary

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Gene symbol
zc3h12b
Gene description
zinc finger CCCH-type containing 12B
See related
Ensembl:ENSCVAG00000010473
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015151955.1 (9308..20829)

NW_015151955.1Genomic Context describing neighboring genes Neighboring gene APC membrane recruitment protein 1-like Neighboring gene moesin-like Neighboring gene N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015151955.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic ribonucleoprotein granule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ribonuclease ZC3H12B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015151955.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    9308..20829
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015403461.1 → XP_015258947.1  probable ribonuclease ZC3H12B

    UniProtKB/TrEMBL
    A0A3Q2CSP4
    Related
    ENSCVAP00000008637.1, ENSCVAT00000001292.1
    Conserved Domains (1) summary
    pfam11977
    Location:204 → 360
    RNase_Zc3h12a; Zc3h12a-like Ribonuclease NYN domain
Nucleotide Protein
Heading Accession and Version

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