U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ncor1 nuclear receptor corepressor 1 [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107091737, updated on 14-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
ncor1
Gene description
nuclear receptor corepressor 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
46
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015150803.1 (583571..661083, complement)

NW_015150803.1Genomic Context describing neighboring genes Neighboring gene adenosine A2b receptor Neighboring gene zinc finger, SWIM-type containing 7 Neighboring gene phosphatidylinositol glycan anchor biosynthesis, class L Neighboring gene centromere protein V Neighboring gene ubiquitin B

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_015150803.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear thyroid hormone receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
nuclear receptor corepressor 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015150803.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    583571..661083 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015385853.1 → XP_015241339.1  nuclear receptor corepressor 1 isoform X5

    Conserved Domains (3) summary
    smart00717
    Location:662 → 707
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00167
    Location:662 → 705
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam15784
    Location:143 → 230
    GPS2_interact; G-protein pathway suppressor 2-interacting domain

  2. XM_015385852.1 → XP_015241338.1  nuclear receptor corepressor 1 isoform X4

    Conserved Domains (3) summary
    smart00717
    Location:662 → 707
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00167
    Location:662 → 705
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam15784
    Location:143 → 230
    GPS2_interact; G-protein pathway suppressor 2-interacting domain

  3. XM_015385850.1 → XP_015241336.1  nuclear receptor corepressor 1 isoform X3

    Conserved Domains (3) summary
    smart00717
    Location:662 → 707
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00167
    Location:662 → 705
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam15784
    Location:143 → 230
    GPS2_interact; G-protein pathway suppressor 2-interacting domain

  4. XM_015385848.1 → XP_015241334.1  nuclear receptor corepressor 1 isoform X1

    Conserved Domains (3) summary
    smart00717
    Location:662 → 707
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00167
    Location:662 → 705
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam15784
    Location:143 → 230
    GPS2_interact; G-protein pathway suppressor 2-interacting domain

  5. XM_015385849.1 → XP_015241335.1  nuclear receptor corepressor 1 isoform X2

    Conserved Domains (3) summary
    smart00717
    Location:647 → 692
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00167
    Location:647 → 690
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam15784
    Location:143 → 230
    GPS2_interact; G-protein pathway suppressor 2-interacting domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.