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jade2 jade family PHD finger 2 [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107090679, updated on 14-Mar-2024

Summary

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Gene symbol
jade2
Gene description
jade family PHD finger 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015150761.1 (59928..290194)

NW_015150761.1Genomic Context describing neighboring genes Neighboring gene CDKN2A interacting protein N-terminal like Neighboring gene ubiquitin-conjugating enzyme E2B (RAD6 homolog) Neighboring gene secretion associated, Ras related GTPase 1B Neighboring gene SEC24 homolog A, COPII coat complex component

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015150761.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone acetyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein Jade-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015150761.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    59928..290194
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015384219.1 → XP_015239705.1  protein Jade-2

    Conserved Domains (3) summary
    COG5141
    Location:119 → 553
    COG5141; PHD zinc finger-containing protein [General function prediction only]
    cd15680
    Location:198 → 243
    PHD_JADE2; PHD finger found in protein Jade-2 and similar proteins
    cd15705
    Location:251 → 361
    ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins
Nucleotide Protein
Heading Accession and Version

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