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smug1 single-strand-selective monofunctional uracil-DNA glycosylase 1 [ Cyprinodon variegatus (sheepshead minnow) ]

Gene ID: 107082067, updated on 14-Mar-2024

Summary

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Gene symbol
smug1
Gene description
single-strand-selective monofunctional uracil-DNA glycosylase 1
See related
Ensembl:ENSCVAG00000001669
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinodon variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Cyprinodontidae; Cyprinodon
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current C_variegatus-1.0 (GCF_000732505.1) Unplaced Scaffold NW_015150500.1 (561761..567173)

NW_015150500.1Genomic Context describing neighboring genes Neighboring gene LIM domain and actin-binding protein 1-like Neighboring gene zinc finger protein 740a Neighboring gene calcium binding and coiled-coil domain 1b Neighboring gene retinoic acid receptor gamma-A-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015150500.1 Unplaced Scaffold Reference C_variegatus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-strand selective uracil DNA N-glycosylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in base-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
single-strand selective monofunctional uracil DNA glycosylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinodon variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_variegatus-1.0 Primary Assembly

Genomic

  1. NW_015150500.1 Reference C_variegatus-1.0 Primary Assembly

    Range
    561761..567173
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015370525.1 → XP_015226011.1  single-strand selective monofunctional uracil DNA glycosylase

    UniProtKB/TrEMBL
    A0A3Q2FCV0
    Related
    ENSCVAP00000000735.1, ENSCVAT00000014578.1
    Conserved Domains (1) summary
    cd10029
    Location:34 → 265
    UDG_F3_SMUG; SMUG: single-strand-selective monofunctional uracil-DNA glycosylase
Nucleotide Protein
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