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TRIM45 tripartite motif containing 45 [ Acinonyx jubatus (cheetah) ]

Gene ID: 106969582, updated on 13-Mar-2024

Summary

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Gene symbol
TRIM45
Gene description
tripartite motif containing 45
Gene type
protein coding
RefSeq status
MODEL
Organism
Acinonyx jubatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Acinonychinae; Acinonyx
Orthologs
human mouse all
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Genomic context

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See TRIM45 in Genome Data Viewer
Location:
chromosome: C1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_04 current VMU_Ajub_asm_v1.0 (GCF_027475565.1) C1 NC_069381.1 (98605888..98614990, complement)

Chromosome C1 - NC_069381.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128313965 Neighboring gene U6 spliceosomal RNA Neighboring gene 60S ribosomal protein L36-like Neighboring gene transcription termination factor 2 Neighboring gene uncharacterized LOC106969659 Neighboring gene V-set domain containing T cell activation inhibitor 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069381.1 Chromosome C1 Reference VMU_Ajub_asm_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tripartite motif-containing protein 45

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027475565.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VMU_Ajub_asm_v1.0

Genomic

  1. NC_069381.1 Reference VMU_Ajub_asm_v1.0

    Range
    98605888..98614990 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027060810.2 → XP_026916611.1  tripartite motif-containing protein 45 isoform X2

    UniProtKB/TrEMBL
    A0A6J1ZGV6
    Conserved Domains (5) summary
    smart00557
    Location:399 → 488
    IG_FLMN; Filamin-type immunoglobulin domains
    cd00021
    Location:189 → 226
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
    pfam00643
    Location:131 → 176
    zf-B_box; B-box zinc finger
    cd16588
    Location:27 → 100
    RING-HC_TRIM45-C-VII; RING finger, HC subclass, found in tripartite motif-containing protein 45 (TRIM45) and similar proteins
    cl25407
    Location:237 → 357
    ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

  2. XM_015066090.3 → XP_014921576.2  tripartite motif-containing protein 45 isoform X1

    UniProtKB/TrEMBL
    A0A6I9ZL80
    Conserved Domains (5) summary
    smart00557
    Location:399 → 497
    IG_FLMN; Filamin-type immunoglobulin domains
    cd00021
    Location:189 → 226
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
    cd16588
    Location:27 → 100
    RING-HC_TRIM45-C-VII; RING finger, HC subclass, found in tripartite motif-containing protein 45 (TRIM45) and similar proteins
    cl00034
    Location:131 → 176
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
    cl25407
    Location:237 → 357
    ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)
Nucleotide Protein
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