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clocka clock circadian regulator a [ Poecilia latipinna (sailfin molly) ]

Gene ID: 106963416, updated on 13-Mar-2024

Summary

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Gene symbol
clocka
Gene description
clock circadian regulator a
See related
Ensembl:ENSPLAG00000018067
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia latipinna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Also known as
clock
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
100 current P_latipinna-1.0 (GCF_001443285.1) Unplaced Scaffold NW_015112679.1 (392418..432941)

NW_015112679.1Genomic Context describing neighboring genes Neighboring gene exocyst complex component 1 Neighboring gene neuromedin U Neighboring gene transmembrane protein 165 Neighboring gene steroid 5 alpha-reductase 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015112679.1 Unplaced Scaffold Reference P_latipinna-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables E-box binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in circadian regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CLOCK-BMAL transcription complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
circadian locomoter output cycles protein kaput

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia latipinna Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_latipinna-1.0

Genomic

  1. NW_015112679.1 Reference P_latipinna-1.0

    Range
    392418..432941
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015058324.1 → XP_014913810.1  circadian locomoter output cycles protein kaput isoform X2

    UniProtKB/TrEMBL
    A0A3B3VUF8
    Conserved Domains (4) summary
    cd00083
    Location:23 → 77
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    cd00130
    Location:266 → 364
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00989
    Location:100 → 193
    PAS; PAS fold
    pfam14598
    Location:265 → 368
    PAS_11; PAS domain

  2. XM_015058321.1 → XP_014913807.1  circadian locomoter output cycles protein kaput isoform X1

    UniProtKB/TrEMBL
    A0A3B3VRV4, A0A3B3VUF8
    Related
    ENSPLAP00000028525.1, ENSPLAT00000022579.1
    Conserved Domains (4) summary
    cd00083
    Location:23 → 77
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    cd00130
    Location:266 → 364
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00989
    Location:100 → 193
    PAS; PAS fold
    pfam14598
    Location:265 → 368
    PAS_11; PAS domain

  3. XM_015058341.1 → XP_014913827.1  circadian locomoter output cycles protein kaput isoform X4

    UniProtKB/TrEMBL
    A0A3B3UNJ2, A0A3B3VUF8
    Related
    ENSPLAP00000014301.1, ENSPLAT00000022574.1
    Conserved Domains (4) summary
    cd00083
    Location:7 → 57
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    cd00130
    Location:246 → 344
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00989
    Location:80 → 173
    PAS; PAS fold
    pfam14598
    Location:245 → 348
    PAS_11; PAS domain

  4. XM_015058332.1 → XP_014913818.1  circadian locomoter output cycles protein kaput isoform X3

    UniProtKB/TrEMBL
    A0A3B3VUF8
    Related
    ENSPLAP00000028502.1, ENSPLAT00000022552.1
    Conserved Domains (4) summary
    cd00130
    Location:250 → 348
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00989
    Location:84 → 177
    PAS; PAS fold
    pfam02646
    Location:498 → 558
    RmuC; RmuC family
    pfam14598
    Location:249 → 352
    PAS_11; PAS domain

  5. XM_015058349.1 → XP_014913835.1  circadian locomoter output cycles protein kaput isoform X5

    UniProtKB/TrEMBL
    A0A3B3VUF8
    Conserved Domains (4) summary
    cd00130
    Location:228 → 326
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00989
    Location:62 → 155
    PAS; PAS fold
    pfam02646
    Location:476 → 536
    RmuC; RmuC family
    pfam14598
    Location:227 → 330
    PAS_11; PAS domain
Nucleotide Protein
Heading Accession and Version

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