U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ATP2B1 ATPase plasma membrane Ca2+ transporting 1 [ Calidris pugnax (ruff) ]

Gene ID: 106901205, updated on 3-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
ATP2B1
Gene description
ATPase plasma membrane Ca2+ transporting 1
See related
Ensembl:ENSCPUG00000002794
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Scolopacidae; Calidris
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ATP2B1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015094506.1 (12212365..12273055)

NW_015094506.1Genomic Context describing neighboring genes Neighboring gene keratocan Neighboring gene epiphycan Neighboring gene polypeptide N-acetylgalactosaminyltransferase 4 Neighboring gene POC1 centriolar protein B Neighboring gene dual specificity phosphatase 6

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_015094506.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables P-type calcium transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables PDZ domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytosolic calcium ion concentration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
plasma membrane calcium-transporting ATPase 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015094506.1 Reference ASM143184v1

    Range
    12212365..12273055
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014963627.1 → XP_014819113.1  plasma membrane calcium-transporting ATPase 1 isoform X3

    Related
    ENSCPUP00000003643.1, ENSCPUT00000004445.1
    Conserved Domains (7) summary
    TIGR01517
    Location:15 → 1064
    ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
    pfam00122
    Location:194 → 464
    E1-E2_ATPase; E1-E2 ATPase
    pfam00689
    Location:880 → 1058
    Cation_ATPase_C; Cation transporting ATPase, C-terminus
    pfam00690
    Location:50 → 120
    Cation_ATPase_N; Cation transporter/ATPase, N-terminus
    pfam12424
    Location:1103 → 1144
    ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal
    pfam12710
    Location:687 → 806
    HAD; haloacid dehalogenase-like hydrolase
    pfam13246
    Location:525 → 611
    Cation_ATPase; Cation transport ATPase (P-type)

  2. XM_014963625.1 → XP_014819111.1  plasma membrane calcium-transporting ATPase 1 isoform X1

    Related
    ENSCPUP00000003650.1, ENSCPUT00000004452.1
    Conserved Domains (7) summary
    TIGR01517
    Location:15 → 1064
    ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
    pfam00122
    Location:194 → 464
    E1-E2_ATPase; E1-E2 ATPase
    pfam00689
    Location:880 → 1058
    Cation_ATPase_C; Cation transporting ATPase, C-terminus
    pfam00690
    Location:50 → 120
    Cation_ATPase_N; Cation transporter/ATPase, N-terminus
    pfam12424
    Location:1103 → 1179
    ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal
    pfam12710
    Location:687 → 806
    HAD; haloacid dehalogenase-like hydrolase
    pfam13246
    Location:525 → 611
    Cation_ATPase; Cation transport ATPase (P-type)

  3. XM_014963626.1 → XP_014819112.1  plasma membrane calcium-transporting ATPase 1 isoform X2

    Related
    ENSCPUP00000003648.1, ENSCPUT00000004450.1
    Conserved Domains (7) summary
    TIGR01517
    Location:15 → 1064
    ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
    pfam00122
    Location:194 → 464
    E1-E2_ATPase; E1-E2 ATPase
    pfam00689
    Location:880 → 1058
    Cation_ATPase_C; Cation transporting ATPase, C-terminus
    pfam00690
    Location:50 → 120
    Cation_ATPase_N; Cation transporter/ATPase, N-terminus
    pfam12424
    Location:1103 → 1150
    ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal
    pfam12710
    Location:687 → 806
    HAD; haloacid dehalogenase-like hydrolase
    pfam13246
    Location:525 → 611
    Cation_ATPase; Cation transport ATPase (P-type)

RNA

  1. XR_001414281.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.