U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

MYO5B myosin VB [ Calidris pugnax (ruff) ]

Gene ID: 106899112, updated on 3-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
MYO5B
Gene description
myosin VB
See related
Ensembl:ENSCPUG00000010915
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Scolopacidae; Calidris
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
40
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015091300.1 (957127..1141758)

NW_015091300.1Genomic Context describing neighboring genes Neighboring gene tetraspanin-3-like Neighboring gene cilia and flagella associated protein 53 Neighboring gene acetyl-CoA acyltransferase 2 Neighboring gene uncharacterized LOC106899127 Neighboring gene lipase G, endothelial type

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_015091300.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microfilament motor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle transport along actin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of myosin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
unconventional myosin-Vb

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015091300.1 Reference ASM143184v1

    Range
    957127..1141758
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014960788.1 → XP_014816274.1  unconventional myosin-Vb

    Related
    ENSCPUP00000015723.1, ENSCPUT00000018662.1
    Conserved Domains (8) summary
    smart00015
    Location:727 → 749
    IQ; Calmodulin-binding motif
    smart00242
    Location:69 → 724
    MYSc; Myosin. Large ATPases
    cd15477
    Location:1438 → 1809
    Myo5b_CBD; Cargo binding domain of myosin 5b
    cd01380
    Location:69 → 713
    MYSc_Myo5; class V myosin, motor domain
    pfam02736
    Location:11 → 36
    Myosin_N; Myosin N-terminal SH3-like domain
    pfam04871
    Location:1115 → 1226
    Uso1_p115_C; Uso1 / p115 like vesicle tethering protein, C terminal region
    pfam07926
    Location:865 → 1000
    TPR_MLP1_2; TPR/MLP1/MLP2-like protein
    cl12013
    Location:906 → 1041
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.