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FAT3 FAT atypical cadherin 3 [ Calidris pugnax (ruff) ]

Gene ID: 106897591, updated on 3-Aug-2024

Summary

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Gene symbol
FAT3
Gene description
FAT atypical cadherin 3
See related
Ensembl:ENSCPUG00000001061
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Scolopacidae; Calidris
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015091118.1 (3865913..4296239)

NW_015091118.1Genomic Context describing neighboring genes Neighboring gene N-acetylated-alpha-linked acidic dipeptidase 2-like Neighboring gene cysteine and histidine rich domain containing 1 Neighboring gene uncharacterized LOC106897560 Neighboring gene melatonin receptor 1B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015091118.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catenin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin Fat 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015091118.1 Reference ASM143184v1

    Range
    3865913..4296239
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014958334.1 → XP_014813820.1  protocadherin Fat 3 isoform X1

    Related
    ENSCPUP00000004836.1, ENSCPUT00000005880.1
    Conserved Domains (4) summary
    cd11304
    Location:1052 → 1145
    Cadherin_repeat; Cadherin tandem repeat domain
    cd00054
    Location:4024 → 4059
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam02210
    Location:3866 → 3995
    Laminin_G_2; Laminin G domain
    cl09101
    Location:289 → 364
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

  2. XM_014958335.1 → XP_014813821.1  protocadherin Fat 3 isoform X2

    Related
    ENSCPUP00000004725.1, ENSCPUT00000005721.1
    Conserved Domains (4) summary
    cd11304
    Location:1052 → 1145
    Cadherin_repeat; Cadherin tandem repeat domain
    cd00054
    Location:4024 → 4059
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam02210
    Location:3866 → 3995
    Laminin_G_2; Laminin G domain
    cl09101
    Location:289 → 364
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus
Nucleotide Protein
Heading Accession and Version

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