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SEC31B SEC31 homolog B, COPII coat complex component [ Calidris pugnax (ruff) ]

Gene ID: 106896377, updated on 3-Aug-2024

Summary

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Gene symbol
SEC31B
Gene description
SEC31 homolog B, COPII coat complex component
See related
Ensembl:ENSCPUG00000013638
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Scolopacidae; Calidris
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015091042.1 (6171568..6203425)

NW_015091042.1Genomic Context describing neighboring genes Neighboring gene hypoxia inducible factor 1 subunit alpha inhibitor Neighboring gene NADH:ubiquinone oxidoreductase subunit B8 Neighboring gene Wnt family member 8B Neighboring gene stearoyl-CoA desaturase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015091042.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in COPII-coated vesicle cargo loading IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of COPII vesicle coat IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum exit site IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein transport protein Sec31B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015091042.1 Reference ASM143184v1

    Range
    6171568..6203425
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014956341.1 → XP_014811827.1  protein transport protein Sec31B isoform X1

    Related
    ENSCPUP00000019904.1, ENSCPUT00000023597.1
    Conserved Domains (7) summary
    COG2319
    Location:33 → 337
    WD40; WD40 repeat [General function prediction only]
    pfam03957
    Location:813 → 884
    Jun; Jun-like transcription factor
    pfam11235
    Location:823 → 1003
    Med25_SD1; Mediator complex subunit 25 synapsin 1
    pfam12067
    Location:852 → 936
    Sox_C_TAD; Sox C-terminal transactivation domain
    sd00039
    Location:13 → 64
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:81 → 335
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    cl14807
    Location:571 → 782
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16

  2. XM_014956342.1 → XP_014811828.1  protein transport protein Sec31B isoform X2

    Related
    ENSCPUP00000019906.1, ENSCPUT00000023599.1
    Conserved Domains (7) summary
    COG2319
    Location:33 → 337
    WD40; WD40 repeat [General function prediction only]
    pfam03957
    Location:813 → 884
    Jun; Jun-like transcription factor
    pfam11235
    Location:823 → 1003
    Med25_SD1; Mediator complex subunit 25 synapsin 1
    pfam12067
    Location:852 → 936
    Sox_C_TAD; Sox C-terminal transactivation domain
    sd00039
    Location:13 → 64
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:81 → 335
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    cl14807
    Location:571 → 782
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
Nucleotide Protein
Heading Accession and Version

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