U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

HIC2 HIC ZBTB transcriptional repressor 2 [ Calidris pugnax (ruff) ]

Gene ID: 106889226, updated on 3-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
HIC2
Gene description
HIC ZBTB transcriptional repressor 2
See related
Ensembl:ENSCPUG00000006467
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Scolopacidae; Calidris
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015090858.1 (1734712..1742647)

NW_015090858.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106889225 Neighboring gene YdjC chitooligosaccharide deacetylase homolog Neighboring gene ubiquitin conjugating enzyme E2 L3 Neighboring gene phosphatidylinositol 4-kinase alpha Neighboring gene serpin family D member 1 Neighboring gene synaptosome associated protein 29

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_015090858.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
hypermethylated in cancer 2 protein
Names
hypermethylated in cancer 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015090858.1 Reference ASM143184v1

    Range
    1734712..1742647
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014944061.1 → XP_014799547.1  hypermethylated in cancer 2 protein

    Related
    ENSCPUP00000009072.1, ENSCPUT00000010832.1
    Conserved Domains (7) summary
    smart00225
    Location:25 → 121
    BTB; Broad-Complex, Tramtrack and Bric a brac
    COG5048
    Location:512 → 566
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:488 → 508
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:486 → 508
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:18 → 118
    BTB; BTB/POZ domain
    pfam13465
    Location:529 → 553
    zf-H2C2_2; Zinc-finger double domain
    pfam15961
    Location:420 → 478
    DUF4764; Domain of unknown function (DUF4764)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.