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HIC2 HIC ZBTB transcriptional repressor 2 [ Homo sapiens (human) ]

Gene ID: 23119, updated on 4-Jul-2021

Summary

Official Symbol
HIC2provided by HGNC
Official Full Name
HIC ZBTB transcriptional repressor 2provided by HGNC
Primary source
HGNC:HGNC:18595
See related
Ensembl:ENSG00000169635 MIM:607712
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HRG22; ZBTB30; ZNF907
Expression
Broad expression in placenta (RPKM 3.4), testis (RPKM 2.9) and 25 other tissues See more
Orthologs
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Genomic context

See HIC2 in Genome Data Viewer
Location:
22q11.21
Exon count:
5
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 22 NC_000022.11 (21417371..21451463)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (21771660..21805752)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene RIMS binding protein 3B Neighboring gene RN7SK pseudogene 63 Neighboring gene uncharacterized LOC105377191 Neighboring gene transmembrane protein 191C Neighboring gene phosphatidylinositol 4-kinase alpha pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

Associated conditions

Description Tests
Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.
GeneReviews: Not available
Genome-wide association study of hematological and biochemical traits in a Japanese population.
GeneReviews: Not available

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • KIAA1020

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables DNA binding NAS
Non-traceable Author Statement
more info
PubMed 
enables DNA-binding transcription repressor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables protein C-terminus binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
is_active_in nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
hypermethylated in cancer 2 protein
Names
HIC1-related gene on chromosome 22 protein
hic-2
hic-3
zinc finger and BTB domain-containing protein 30

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_015094.3NP_055909.2  hypermethylated in cancer 2 protein

    See identical proteins and their annotated locations for NP_055909.2

    Status: VALIDATED

    Source sequence(s)
    AP000552, AP000556, AP000557, BC094787, BM675330, CN373403
    Consensus CDS
    CCDS13789.1
    UniProtKB/Swiss-Prot
    Q96JB3
    Related
    ENSP00000385319.2, ENST00000407464.7
    Conserved Domains (7) summary
    smart00225
    Location:47141
    BTB; Broad-Complex, Tramtrack and Bric a brac
    COG5048
    Location:559613
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:535555
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:533555
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:40140
    BTB; BTB/POZ domain
    pfam13465
    Location:576600
    zf-H2C2_2; Zinc-finger double domain
    pfam15724
    Location:300395
    TMEM119; TMEM119 family

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p13 Primary Assembly

    Range
    21417371..21451463
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017028669.2XP_016884158.1  hypermethylated in cancer 2 protein isoform X2

    UniProtKB/Swiss-Prot
    Q96JB3
  2. XM_011530008.3XP_011528310.1  hypermethylated in cancer 2 protein isoform X1

    See identical proteins and their annotated locations for XP_011528310.1

    UniProtKB/Swiss-Prot
    Q96JB3
    Conserved Domains (7) summary
    smart00225
    Location:47141
    BTB; Broad-Complex, Tramtrack and Bric a brac
    COG5048
    Location:559613
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:535555
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:533555
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:40140
    BTB; BTB/POZ domain
    pfam13465
    Location:576600
    zf-H2C2_2; Zinc-finger double domain
    pfam15724
    Location:300395
    TMEM119; TMEM119 family
  3. XM_011530010.3XP_011528312.1  hypermethylated in cancer 2 protein isoform X1

    See identical proteins and their annotated locations for XP_011528312.1

    UniProtKB/Swiss-Prot
    Q96JB3
    Related
    ENSP00000384889.2, ENST00000407598.2
    Conserved Domains (7) summary
    smart00225
    Location:47141
    BTB; Broad-Complex, Tramtrack and Bric a brac
    COG5048
    Location:559613
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:535555
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:533555
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:40140
    BTB; BTB/POZ domain
    pfam13465
    Location:576600
    zf-H2C2_2; Zinc-finger double domain
    pfam15724
    Location:300395
    TMEM119; TMEM119 family
  4. XM_011530007.2XP_011528309.1  hypermethylated in cancer 2 protein isoform X1

    See identical proteins and their annotated locations for XP_011528309.1

    UniProtKB/Swiss-Prot
    Q96JB3
    Conserved Domains (7) summary
    smart00225
    Location:47141
    BTB; Broad-Complex, Tramtrack and Bric a brac
    COG5048
    Location:559613
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:535555
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:533555
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:40140
    BTB; BTB/POZ domain
    pfam13465
    Location:576600
    zf-H2C2_2; Zinc-finger double domain
    pfam15724
    Location:300395
    TMEM119; TMEM119 family
  5. XM_011530009.2XP_011528311.1  hypermethylated in cancer 2 protein isoform X1

    See identical proteins and their annotated locations for XP_011528311.1

    UniProtKB/Swiss-Prot
    Q96JB3
    Conserved Domains (7) summary
    smart00225
    Location:47141
    BTB; Broad-Complex, Tramtrack and Bric a brac
    COG5048
    Location:559613
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:535555
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:533555
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:40140
    BTB; BTB/POZ domain
    pfam13465
    Location:576600
    zf-H2C2_2; Zinc-finger double domain
    pfam15724
    Location:300395
    TMEM119; TMEM119 family
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