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RNF114 ring finger protein 114 [ Calidris pugnax (ruff) ]

Gene ID: 106889112, updated on 3-Aug-2024

Summary

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Gene symbol
RNF114
Gene description
ring finger protein 114
See related
Ensembl:ENSCPUG00000005334
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Scolopacidae; Calidris
Orthologs
human mouse all
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Genomic context

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See RNF114 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015090855.1 (1878019..1884653)

NW_015090855.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 9 member A8 Neighboring gene opsin-5-like Neighboring gene spermatogenesis associated 2 Neighboring gene snail family transcriptional repressor 1 Neighboring gene ubiquitin-conjugating enzyme E2 variant 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015090855.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RNF114

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015090855.1 Reference ASM143184v1

    Range
    1878019..1884653
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014943857.1 → XP_014799343.1  E3 ubiquitin-protein ligase RNF114

    Related
    ENSCPUP00000007386.1, ENSCPUT00000008920.1
    Conserved Domains (2) summary
    cd00162
    Location:24 → 67
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    pfam05605
    Location:136 → 196
    zf-Di19; Drought induced 19 protein (Di19), zinc-binding
Nucleotide Protein
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