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NKX3-1 NK3 homeobox 1 [ Calidris pugnax (ruff) ]

Gene ID: 106888713, updated on 3-Aug-2024

Summary

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Gene symbol
NKX3-1
Gene description
NK3 homeobox 1
See related
Ensembl:ENSCPUG00000016472
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Scolopacidae; Calidris
Orthologs
human mouse all
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Genomic context

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See NKX3-1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015090849.1 (2219738..2222592)

NW_015090849.1Genomic Context describing neighboring genes Neighboring gene stanniocalcin 1 Neighboring gene NK2 homeobox 6 Neighboring gene uncharacterized LOC106888714 Neighboring gene solute carrier family 25 member 37

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015090849.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein Nkx-3.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015090849.1 Reference ASM143184v1

    Range
    2219738..2222592
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014943141.1 → XP_014798627.1  homeobox protein Nkx-3.1

    Related
    ENSCPUP00000024259.1, ENSCPUT00000028613.1
    Conserved Domains (1) summary
    pfam00046
    Location:132 → 185
    Homeobox; Homeobox domain
Nucleotide Protein
Heading Accession and Version

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