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NPAS3 neuronal PAS domain protein 3 [ Calidris pugnax (ruff) ]

Gene ID: 106888057, updated on 3-Aug-2024

Summary

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Gene symbol
NPAS3
Gene description
neuronal PAS domain protein 3
See related
Ensembl:ENSCPUG00000002624
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Scolopacidae; Calidris
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015090839.1 (8265644..8877148, complement)

NW_015090839.1Genomic Context describing neighboring genes Neighboring gene serine palmitoyltransferase small subunit A Neighboring gene egl-9 family hypoxia inducible factor 3 Neighboring gene uncharacterized LOC106887966 Neighboring gene A-kinase anchoring protein 6 Neighboring gene Rho GTPase activating protein 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015090839.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neuronal PAS domain-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015090839.1 Reference ASM143184v1

    Range
    8265644..8877148 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014942056.1 → XP_014797542.1  neuronal PAS domain-containing protein 3 isoform X1

    Related
    ENSCPUP00000003436.1, ENSCPUT00000004162.1
    Conserved Domains (5) summary
    smart00091
    Location:159 → 217
    PAS; PAS domain
    cd00083
    Location:59 → 116
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    cd00130
    Location:338 → 420
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00989
    Location:159 → 217
    PAS; PAS fold
    pfam08447
    Location:350 → 437
    PAS_3; PAS fold

  2. XM_014942057.1 → XP_014797543.1  neuronal PAS domain-containing protein 3 isoform X2

    Conserved Domains (5) summary
    smart00091
    Location:129 → 187
    PAS; PAS domain
    cd00083
    Location:29 → 86
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    cd00130
    Location:308 → 390
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00989
    Location:129 → 187
    PAS; PAS fold
    pfam08447
    Location:320 → 407
    PAS_3; PAS fold
Nucleotide Protein
Heading Accession and Version

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