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NGLY1 N-glycanase 1 [ Calidris pugnax (ruff) ]

Gene ID: 106885578, updated on 3-Aug-2024

Summary

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Gene symbol
NGLY1
Gene description
N-glycanase 1
See related
Ensembl:ENSCPUG00000010670
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Scolopacidae; Calidris
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015090803.1 (4718641..4743271)

NW_015090803.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 3B Neighboring gene uncharacterized LOC106885591 Neighboring gene 3-oxoacyl-ACP synthase, mitochondrial Neighboring gene DNA topoisomerase 2-beta-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015090803.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycoprotein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein deglycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein quality control for misfolded or incompletely synthesized proteins IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015090803.1 Reference ASM143184v1

    Range
    4718641..4743271
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014937876.1 → XP_014793362.1  peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase

    Related
    ENSCPUP00000015310.1, ENSCPUT00000018154.1
    Conserved Domains (5) summary
    cd10459
    Location:16 → 108
    PUB_PNGase; PNGase/UBA or UBX (PUB) domain of the P97 adaptor protein Peptide:N-glycanase (PNGase)
    COG1305
    Location:289 → 350
    YebA; Transglutaminase-like enzyme, putative cysteine protease [Posttranslational modification, protein turnover, chaperones]
    pfam01841
    Location:271 → 350
    Transglut_core; Transglutaminase-like superfamily
    pfam03835
    Location:334 → 431
    Rad4; Rad4 transglutaminase-like domain
    pfam04721
    Location:453 → 648
    PAW; PNGase C-terminal domain, mannose-binding module PAW
Nucleotide Protein
Heading Accession and Version

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