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ATP2C1 ATPase secretory pathway Ca2+ transporting 1 [ Calidris pugnax (ruff) ]

Gene ID: 106885523, updated on 3-Aug-2024

Summary

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Gene symbol
ATP2C1
Gene description
ATPase secretory pathway Ca2+ transporting 1
See related
Ensembl:ENSCPUG00000009686
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Scolopacidae; Calidris
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015090803.1 (618487..690644, complement)

NW_015090803.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106885508 Neighboring gene NIMA related kinase 11 Neighboring gene asteroid homolog 1 Neighboring gene phosphoinositide-3-kinase regulatory subunit 4 Neighboring gene collagen type VI alpha 6 chain

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015090803.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables P-type calcium transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular calcium ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in manganese ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium-transporting ATPase type 2C member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015090803.1 Reference ASM143184v1

    Range
    618487..690644 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014937766.1 → XP_014793252.1  calcium-transporting ATPase type 2C member 1 isoform X1

    Conserved Domains (6) summary
    TIGR01522
    Location:56 → 936
    ATPase-IIA2_Ca; golgi membrane calcium-translocating P-type ATPase
    COG4087
    Location:637 → 712
    COG4087; Soluble P-type ATPase [General function prediction only]
    pfam00122
    Location:139 → 372
    E1-E2_ATPase; E1-E2 ATPase
    pfam00689
    Location:759 → 931
    Cation_ATPase_C; Cation transporting ATPase, C-terminus
    pfam00690
    Location:59 → 127
    Cation_ATPase_N; Cation transporter/ATPase, N-terminus
    pfam13246
    Location:443 → 526
    Cation_ATPase; Cation transport ATPase (P-type)

  2. XM_014937767.1 → XP_014793253.1  calcium-transporting ATPase type 2C member 1 isoform X2

    Related
    ENSCPUP00000013679.1, ENSCPUT00000016321.1
    Conserved Domains (6) summary
    TIGR01522
    Location:23 → 903
    ATPase-IIA2_Ca; golgi membrane calcium-translocating P-type ATPase
    COG4087
    Location:604 → 679
    COG4087; Soluble P-type ATPase [General function prediction only]
    pfam00122
    Location:106 → 339
    E1-E2_ATPase; E1-E2 ATPase
    pfam00689
    Location:726 → 898
    Cation_ATPase_C; Cation transporting ATPase, C-terminus
    pfam00690
    Location:26 → 94
    Cation_ATPase_N; Cation transporter/ATPase, N-terminus
    pfam13246
    Location:410 → 493
    Cation_ATPase; Cation transport ATPase (P-type)

  3. XM_014937769.1 → XP_014793255.1  calcium-transporting ATPase type 2C member 1 isoform X3

    Conserved Domains (6) summary
    TIGR01522
    Location:7 → 887
    ATPase-IIA2_Ca; golgi membrane calcium-translocating P-type ATPase
    COG4087
    Location:588 → 663
    COG4087; Soluble P-type ATPase [General function prediction only]
    pfam00122
    Location:90 → 323
    E1-E2_ATPase; E1-E2 ATPase
    pfam00689
    Location:710 → 882
    Cation_ATPase_C; Cation transporting ATPase, C-terminus
    pfam00690
    Location:10 → 78
    Cation_ATPase_N; Cation transporter/ATPase, N-terminus
    pfam13246
    Location:394 → 477
    Cation_ATPase; Cation transport ATPase (P-type)

  4. XM_014937768.1 → XP_014793254.1  calcium-transporting ATPase type 2C member 1 isoform X2

    Conserved Domains (6) summary
    TIGR01522
    Location:23 → 903
    ATPase-IIA2_Ca; golgi membrane calcium-translocating P-type ATPase
    COG4087
    Location:604 → 679
    COG4087; Soluble P-type ATPase [General function prediction only]
    pfam00122
    Location:106 → 339
    E1-E2_ATPase; E1-E2 ATPase
    pfam00689
    Location:726 → 898
    Cation_ATPase_C; Cation transporting ATPase, C-terminus
    pfam00690
    Location:26 → 94
    Cation_ATPase_N; Cation transporter/ATPase, N-terminus
    pfam13246
    Location:410 → 493
    Cation_ATPase; Cation transport ATPase (P-type)
Nucleotide Protein
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