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GRIA1 glutamate ionotropic receptor AMPA type subunit 1 [ Equus asinus (ass) ]

Gene ID: 106834911, updated on 13-Mar-2024

Summary

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Gene symbol
GRIA1
Gene description
glutamate ionotropic receptor AMPA type subunit 1
See related
Ensembl:ENSEASG00005001130
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus asinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
17
Annotation release Status Assembly Chr Location
101 current ASM1607732v2 (GCF_016077325.2) 9 NC_052185.1 (47585637..47879240, complement)
100 previous assembly ASM130575v1 (GCF_001305755.1) Unplaced Scaffold NW_014637985.1 (1444056..1738664)

Chromosome 9 - NC_052185.1Genomic Context describing neighboring genes Neighboring gene U-scoloptoxin-Sm5a-like Neighboring gene family with sequence similarity 114 member A2 Neighboring gene adenosine deaminase-like protein Neighboring gene uncharacterized LOC123288765 Neighboring gene 40S ribosomal protein S3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables AMPA glutamate receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables neurotransmitter receptor activity involved in regulation of postsynaptic cytosolic calcium ion concentration IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in modulation of chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic transmission, glutamatergic IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of AMPA glutamate receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in dendritic spine IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glutamate receptor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus asinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1607732v2

Genomic

  1. NC_052185.1 Reference ASM1607732v2

    Range
    47585637..47879240 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014846918.2 → XP_014702404.1  glutamate receptor 1 isoform X5

    Conserved Domains (4) summary
    cd06390
    Location:26 → 387
    PBP1_iGluR_AMPA_GluR1; N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor
    cd13729
    Location:404 → 785
    PBP2_iGluR_AMPA_GluR1; The ligand-binding domain of the AMPA (alpha-amino-3-hydroxyl-5-methyl-4-isoxazolepropionic acid) subtype GluR1 of ionotropic glutamate receptors, a member of the type 2 periplasmic binding fold protein superfamily
    pfam00060
    Location:536 → 815
    Lig_chan; Ligand-gated ion channel
    pfam01094
    Location:37 → 370
    ANF_receptor; Receptor family ligand binding region

  2. XM_014846915.2 → XP_014702401.1  glutamate receptor 1 isoform X2

    Conserved Domains (4) summary
    cd06390
    Location:26 → 390
    PBP1_iGluR_AMPA_GluR1; N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor
    cd13729
    Location:407 → 788
    PBP2_iGluR_AMPA_GluR1; The ligand-binding domain of the AMPA (alpha-amino-3-hydroxyl-5-methyl-4-isoxazolepropionic acid) subtype GluR1 of ionotropic glutamate receptors, a member of the type 2 periplasmic binding fold protein superfamily
    pfam00060
    Location:539 → 818
    Lig_chan; Ligand-gated ion channel
    pfam01094
    Location:37 → 373
    ANF_receptor; Receptor family ligand binding region

  3. XM_014846914.2 → XP_014702400.1  glutamate receptor 1 isoform X1

    Conserved Domains (4) summary
    cd06390
    Location:26 → 390
    PBP1_iGluR_AMPA_GluR1; N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor
    cd13729
    Location:407 → 788
    PBP2_iGluR_AMPA_GluR1; The ligand-binding domain of the AMPA (alpha-amino-3-hydroxyl-5-methyl-4-isoxazolepropionic acid) subtype GluR1 of ionotropic glutamate receptors, a member of the type 2 periplasmic binding fold protein superfamily
    pfam00060
    Location:539 → 818
    Lig_chan; Ligand-gated ion channel
    pfam01094
    Location:37 → 373
    ANF_receptor; Receptor family ligand binding region

  4. XM_014846917.2 → XP_014702403.1  glutamate receptor 1 isoform X4

    UniProtKB/TrEMBL
    A0A8C4KTG0
    Related
    ENSEASP00005001369.2, ENSEAST00005001545.2
    Conserved Domains (2) summary
    cd13729
    Location:406 → 787
    PBP2_iGluR_AMPA_GluR1; The ligand-binding domain of the AMPA (alpha-amino-3-hydroxyl-5-methyl-4-isoxazolepropionic acid) subtype GluR1 of ionotropic glutamate receptors, a member of the type 2 periplasmic binding fold protein superfamily
    cd06390
    Location:26 → 392
    PBP1_iGluR_AMPA_GluR1; N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor

  5. XM_014846916.2 → XP_014702402.1  glutamate receptor 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C4KV19
    Related
    ENSEASP00005001363.1, ENSEAST00005001536.2
    Conserved Domains (2) summary
    cd13729
    Location:406 → 787
    PBP2_iGluR_AMPA_GluR1; The ligand-binding domain of the AMPA (alpha-amino-3-hydroxyl-5-methyl-4-isoxazolepropionic acid) subtype GluR1 of ionotropic glutamate receptors, a member of the type 2 periplasmic binding fold protein superfamily
    cd06390
    Location:26 → 392
    PBP1_iGluR_AMPA_GluR1; N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor
Nucleotide Protein
Heading Accession and Version

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